Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26489 | 3' | -56.2 | NC_005357.1 | + | 449 | 0.7 | 0.361573 |
Target: 5'- gGGCUGcugcgCGGCCAG-CUugCgGGCGCu -3' miRNA: 3'- -CCGAUaua--GCCGGUCuGGugG-CCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 609 | 0.66 | 0.550466 |
Target: 5'- uGCgg-GUCGGCCAGcAgCGCCGuGgACa -3' miRNA: 3'- cCGauaUAGCCGGUC-UgGUGGC-CgUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 664 | 0.7 | 0.336107 |
Target: 5'- aGGCUGUAgccaCCAGGCCGCCuacggcGGCGCc -3' miRNA: 3'- -CCGAUAUagccGGUCUGGUGG------CCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 2223 | 0.7 | 0.361573 |
Target: 5'- cGCUccAUGUCGcgguauaaacGCCGGGCCuugGCCGGCAg -3' miRNA: 3'- cCGA--UAUAGC----------CGGUCUGG---UGGCCGUg -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 2827 | 0.66 | 0.550466 |
Target: 5'- aGGUgcUcgCGGCCAcGCgCAgCGGCGCc -3' miRNA: 3'- -CCGauAuaGCCGGUcUG-GUgGCCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 4197 | 0.66 | 0.550466 |
Target: 5'- gGGC-AUGUUGGCCGcgagcacgucgcGGCUugCGGCuuGCg -3' miRNA: 3'- -CCGaUAUAGCCGGU------------CUGGugGCCG--UG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 4342 | 0.7 | 0.332812 |
Target: 5'- gGGCUGggguagcagaggaAUCGGCCGGACgGCaGGCGg -3' miRNA: 3'- -CCGAUa------------UAGCCGGUCUGgUGgCCGUg -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 5087 | 0.68 | 0.44565 |
Target: 5'- cGGUUGgaacaggCGGCCGGcCCAgcguCCGGUGCg -3' miRNA: 3'- -CCGAUaua----GCCGGUCuGGU----GGCCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 5289 | 0.66 | 0.604644 |
Target: 5'- cGGCguUGUCGGCCAcggcgucGAuauuuuccaggUCGCCGGcCACg -3' miRNA: 3'- -CCGauAUAGCCGGU-------CU-----------GGUGGCC-GUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 6381 | 0.66 | 0.550466 |
Target: 5'- cGGCa--AUCaGGCgCAGGCCGgCCGGCcCg -3' miRNA: 3'- -CCGauaUAG-CCG-GUCUGGU-GGCCGuG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 7148 | 0.68 | 0.465776 |
Target: 5'- cGGCUG---CGGCCuggauGACCaggGCCgGGCGCu -3' miRNA: 3'- -CCGAUauaGCCGGu----CUGG---UGG-CCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 8278 | 0.67 | 0.507372 |
Target: 5'- cGGCUuccagGGCCAcGCUGCCGGgGCa -3' miRNA: 3'- -CCGAuauagCCGGUcUGGUGGCCgUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 8397 | 0.69 | 0.388351 |
Target: 5'- uGGCUGcguagccaGUCGGCCAGG--GCCGuGCGCu -3' miRNA: 3'- -CCGAUa-------UAGCCGGUCUggUGGC-CGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 9539 | 0.67 | 0.528757 |
Target: 5'- cGGCccuguUCGGCCAGugCgaucugcucGCCGGUg- -3' miRNA: 3'- -CCGauau-AGCCGGUCugG---------UGGCCGug -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 10059 | 0.66 | 0.572441 |
Target: 5'- uGCUGgg-CGGCCgGGGCC-UCGGCGg -3' miRNA: 3'- cCGAUauaGCCGG-UCUGGuGGCCGUg -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 10350 | 0.67 | 0.496818 |
Target: 5'- cGGCcGUGUUGGCgGGGCCGauGaGCAUg -3' miRNA: 3'- -CCGaUAUAGCCGgUCUGGUggC-CGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 11139 | 0.67 | 0.53849 |
Target: 5'- aGCagu-UCGGCCugcugcuGGGCCGCCuGCGCa -3' miRNA: 3'- cCGauauAGCCGG-------UCUGGUGGcCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 11997 | 0.66 | 0.593505 |
Target: 5'- uGGCcuuuuccacGUCGGCCAGcagcgcgGCCgugGCCGGCGa -3' miRNA: 3'- -CCGaua------UAGCCGGUC-------UGG---UGGCCGUg -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 12712 | 0.66 | 0.605759 |
Target: 5'- uGGCUGUucaaGUCGcCCGGcCCGuuGGUGCu -3' miRNA: 3'- -CCGAUA----UAGCcGGUCuGGUggCCGUG- -5' |
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26489 | 3' | -56.2 | NC_005357.1 | + | 12784 | 0.66 | 0.594618 |
Target: 5'- uGCUugaaGUCGGCCucAGACagGCUGGUGCg -3' miRNA: 3'- cCGAua--UAGCCGG--UCUGg-UGGCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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