miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26489 3' -56.2 NC_005357.1 + 23224 0.69 0.397562
Target:  5'- cGGCc---UCGGCCucGGCCACCGaccGCGCc -3'
miRNA:   3'- -CCGauauAGCCGGu-CUGGUGGC---CGUG- -5'
26489 3' -56.2 NC_005357.1 + 24701 0.71 0.289181
Target:  5'- aGGCUGUccaucggugccaGUCGGUCGGGCCgcuuccaccgcGCCuGCGCg -3'
miRNA:   3'- -CCGAUA------------UAGCCGGUCUGG-----------UGGcCGUG- -5'
26489 3' -56.2 NC_005357.1 + 37225 0.71 0.29663
Target:  5'- cGGUUGca--GGCCAGcACCACCaGCACc -3'
miRNA:   3'- -CCGAUauagCCGGUC-UGGUGGcCGUG- -5'
26489 3' -56.2 NC_005357.1 + 664 0.7 0.336107
Target:  5'- aGGCUGUAgccaCCAGGCCGCCuacggcGGCGCc -3'
miRNA:   3'- -CCGAUAUagccGGUCUGGUGG------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 449 0.7 0.361573
Target:  5'- gGGCUGcugcgCGGCCAG-CUugCgGGCGCu -3'
miRNA:   3'- -CCGAUaua--GCCGGUCuGGugG-CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 32929 0.7 0.370355
Target:  5'- cGGCUGcuguUCGGCCAGGgCGaccaCGGCuGCg -3'
miRNA:   3'- -CCGAUau--AGCCGGUCUgGUg---GCCG-UG- -5'
26489 3' -56.2 NC_005357.1 + 24575 0.69 0.388351
Target:  5'- aGGCcggccaCGGUCGGGCCGuCCGGCGu -3'
miRNA:   3'- -CCGauaua-GCCGGUCUGGU-GGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 8397 0.69 0.388351
Target:  5'- uGGCUGcguagccaGUCGGCCAGG--GCCGuGCGCu -3'
miRNA:   3'- -CCGAUa-------UAGCCGGUCUggUGGC-CGUG- -5'
26489 3' -56.2 NC_005357.1 + 13157 0.69 0.397562
Target:  5'- cGCcucgAUGUCGGCCAGugucgGCCGCgcugGGCGCc -3'
miRNA:   3'- cCGa---UAUAGCCGGUC-----UGGUGg---CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 21747 0.72 0.270501
Target:  5'- gGGCg----CGGCCgcguccacauaggacAGGCCGCCcGGCACg -3'
miRNA:   3'- -CCGauauaGCCGG---------------UCUGGUGG-CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 28564 0.72 0.260851
Target:  5'- cGGCcAUcgCGGCgCGcacgucGGCCACCGGCAg -3'
miRNA:   3'- -CCGaUAuaGCCG-GU------CUGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 40657 0.73 0.228668
Target:  5'- ---cGUAUCGGCCcGACgCGCCaGGCGCa -3'
miRNA:   3'- ccgaUAUAGCCGGuCUG-GUGG-CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33426 0.77 0.121059
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCGa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 33474 0.77 0.121059
Target:  5'- uGGCUAUcgCGGCaCGGccACCGCUGGCGa -3'
miRNA:   3'- -CCGAUAuaGCCG-GUC--UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 32528 0.77 0.124553
Target:  5'- aGGCUGgugAUgcCGGCCAGgaugcuGCCGCCGGCGa -3'
miRNA:   3'- -CCGAUa--UA--GCCGGUC------UGGUGGCCGUg -5'
26489 3' -56.2 NC_005357.1 + 33210 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33258 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33306 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 33354 0.75 0.164961
Target:  5'- uGGCUAUcgCGGCaCGG-CCACCgcuggcuaucgcGGCACg -3'
miRNA:   3'- -CCGAUAuaGCCG-GUCuGGUGG------------CCGUG- -5'
26489 3' -56.2 NC_005357.1 + 29024 0.75 0.169126
Target:  5'- aGGCgccgcgcuUCGGCCAGGucgauacCCACCGGCGg -3'
miRNA:   3'- -CCGauau----AGCCGGUCU-------GGUGGCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.