miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26490 3' -51.4 NC_005357.1 + 33120 0.69 0.705711
Target:  5'- aCGUGcGCCGCCAgGUCGc----CGAGGa -3'
miRNA:   3'- -GCAC-UGGCGGUgCAGCuuguuGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 5742 0.69 0.716755
Target:  5'- --aGAUCGCCcagcGCGcCGGGCAGCGAGu -3'
miRNA:   3'- gcaCUGGCGG----UGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 16066 0.69 0.727711
Target:  5'- aCGUGGCCGCCGCG-C--GCGGCGc-- -3'
miRNA:   3'- -GCACUGGCGGUGCaGcuUGUUGUucc -5'
26490 3' -51.4 NC_005357.1 + 19048 0.69 0.738565
Target:  5'- --cGGCCGCCggcgGCGUCGAuCAGCGuguccucgccgAGGu -3'
miRNA:   3'- gcaCUGGCGG----UGCAGCUuGUUGU-----------UCC- -5'
26490 3' -51.4 NC_005357.1 + 29201 0.69 0.749306
Target:  5'- -aUGACCGgCAgGUCGGACGcgcGCAuGGc -3'
miRNA:   3'- gcACUGGCgGUgCAGCUUGU---UGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 8398 0.69 0.749306
Target:  5'- ---cGCCGCCcacgUGUCGGGCAGCGAGc -3'
miRNA:   3'- gcacUGGCGGu---GCAGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 336 0.68 0.770398
Target:  5'- -cUGGCgGUgGCGUCGcGCAGCAGGc -3'
miRNA:   3'- gcACUGgCGgUGCAGCuUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 28338 0.68 0.770398
Target:  5'- uCGaUGGCCuugGCCuCGUCGGGCAGCGcgcGGa -3'
miRNA:   3'- -GC-ACUGG---CGGuGCAGCUUGUUGUu--CC- -5'
26490 3' -51.4 NC_005357.1 + 4040 0.68 0.780723
Target:  5'- ---aGCCgGCCGCGgCGAGCGGCAGGc -3'
miRNA:   3'- gcacUGG-CGGUGCaGCUUGUUGUUCc -5'
26490 3' -51.4 NC_005357.1 + 34275 0.68 0.800872
Target:  5'- --gGGCCGCaucauCGaggUGAACGGCAAGGg -3'
miRNA:   3'- gcaCUGGCGgu---GCa--GCUUGUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 9319 0.67 0.810672
Target:  5'- -cUGGCgGCgCACGUCGGcGCGGCGGGcGg -3'
miRNA:   3'- gcACUGgCG-GUGCAGCU-UGUUGUUC-C- -5'
26490 3' -51.4 NC_005357.1 + 2041 0.67 0.820273
Target:  5'- --cGGCCGCCucgGCGaCGAugGAuuCAAGGg -3'
miRNA:   3'- gcaCUGGCGG---UGCaGCUugUU--GUUCC- -5'
26490 3' -51.4 NC_005357.1 + 11155 0.67 0.820273
Target:  5'- ---cGCUGCCACGUCGGGguCAACGAa- -3'
miRNA:   3'- gcacUGGCGGUGCAGCUU--GUUGUUcc -5'
26490 3' -51.4 NC_005357.1 + 5595 0.67 0.824055
Target:  5'- cCGUGucgauguCCGCCucguugguagccacgGCGUCGAuguUGGCGAGGu -3'
miRNA:   3'- -GCACu------GGCGG---------------UGCAGCUu--GUUGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 14040 0.67 0.842442
Target:  5'- ---cGCCGCCgGCGUCGAACuggaacaccucgcCAAGGa -3'
miRNA:   3'- gcacUGGCGG-UGCAGCUUGuu-----------GUUCC- -5'
26490 3' -51.4 NC_005357.1 + 39679 0.67 0.847779
Target:  5'- aGUGGUCGgCACGccCGAGCAGCGccGGGc -3'
miRNA:   3'- gCACUGGCgGUGCa-GCUUGUUGU--UCC- -5'
26490 3' -51.4 NC_005357.1 + 15711 0.67 0.847779
Target:  5'- --cGuCCGCCugGgcaUCGAACuggcGCGAGGc -3'
miRNA:   3'- gcaCuGGCGGugC---AGCUUGu---UGUUCC- -5'
26490 3' -51.4 NC_005357.1 + 22670 0.67 0.847779
Target:  5'- --aGACCGCCuCGUgGccGGCAACAAcGGc -3'
miRNA:   3'- gcaCUGGCGGuGCAgC--UUGUUGUU-CC- -5'
26490 3' -51.4 NC_005357.1 + 11996 0.66 0.856481
Target:  5'- -uUGGCCuuuuCCACGUCGGccaGCAGCGcGGc -3'
miRNA:   3'- gcACUGGc---GGUGCAGCU---UGUUGUuCC- -5'
26490 3' -51.4 NC_005357.1 + 5319 0.66 0.856481
Target:  5'- cCGUaGGCCGCgagCACGUgGcGCAGCAuGGc -3'
miRNA:   3'- -GCA-CUGGCG---GUGCAgCuUGUUGUuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.