Results 1 - 20 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26493 | 5' | -52.6 | NC_005357.1 | + | 24855 | 1.15 | 0.000538 |
Target: 5'- aGCUGCGAAAUCGACAACACCGGCGCCg -3' miRNA: 3'- -CGACGCUUUAGCUGUUGUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 34645 | 0.8 | 0.152354 |
Target: 5'- gGCgGCGAAGg-GugGACGCCGGCGCa -3' miRNA: 3'- -CGaCGCUUUagCugUUGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 15081 | 0.78 | 0.198106 |
Target: 5'- uGCUGCGAGGUCGGCccggccuacguggaaAGCAaCGcGCGCCu -3' miRNA: 3'- -CGACGCUUUAGCUG---------------UUGUgGC-CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 7748 | 0.78 | 0.218595 |
Target: 5'- cCUGCGcAGUCagcgauuGCAGCACCGGCGCg -3' miRNA: 3'- cGACGCuUUAGc------UGUUGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 10472 | 0.78 | 0.218595 |
Target: 5'- cCUG-GAAGUCGcGCAGCACCGGC-CCg -3' miRNA: 3'- cGACgCUUUAGC-UGUUGUGGCCGcGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 25721 | 0.78 | 0.218595 |
Target: 5'- cGCgGCGggGUCGuCGuccuCACCGGCGgCa -3' miRNA: 3'- -CGaCGCuuUAGCuGUu---GUGGCCGCgG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 17769 | 0.77 | 0.250026 |
Target: 5'- cGCgGCGGGcgCGACAACACCauccuGGCccGCCg -3' miRNA: 3'- -CGaCGCUUuaGCUGUUGUGG-----CCG--CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 23370 | 0.76 | 0.256744 |
Target: 5'- --gGCGAggacacgcuGAUCGACGcCGCCGGCgGCCg -3' miRNA: 3'- cgaCGCU---------UUAGCUGUuGUGGCCG-CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 6599 | 0.76 | 0.256744 |
Target: 5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3' miRNA: 3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 31963 | 0.76 | 0.263608 |
Target: 5'- uGCUGCGcGAcuUCcagGGCGACGCCaagGGCGCCa -3' miRNA: 3'- -CGACGCuUU--AG---CUGUUGUGG---CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 30358 | 0.76 | 0.270621 |
Target: 5'- --aGCGAAA-CGGCAGgacacCAUCGGCGCCa -3' miRNA: 3'- cgaCGCUUUaGCUGUU-----GUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 32005 | 0.76 | 0.292559 |
Target: 5'- -gUGCGAAAcccUCGAC-ACGCUGGaCGCCc -3' miRNA: 3'- cgACGCUUU---AGCUGuUGUGGCC-GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 36011 | 0.75 | 0.300174 |
Target: 5'- cGCgaGCGAGGacgaguUCGACGACAUCaccgagGGCGCCg -3' miRNA: 3'- -CGa-CGCUUU------AGCUGUUGUGG------CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9839 | 0.75 | 0.307942 |
Target: 5'- cGCUGCaccucGGuuUCGGCGucgaugagcgugGCACCGGCGCg -3' miRNA: 3'- -CGACG-----CUuuAGCUGU------------UGUGGCCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 18372 | 0.75 | 0.332161 |
Target: 5'- gGCgGCGAGGUUGGCcuUGCCgauGGCGCCg -3' miRNA: 3'- -CGaCGCUUUAGCUGuuGUGG---CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 36842 | 0.74 | 0.34054 |
Target: 5'- --gGCGGAcAUCGACAcgguggcggccaGCGuuGGCGCCg -3' miRNA: 3'- cgaCGCUU-UAGCUGU------------UGUggCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 34721 | 0.74 | 0.34054 |
Target: 5'- cGCUGCaGuucAUCGGCAA-GCCGGcCGCCg -3' miRNA: 3'- -CGACG-Cuu-UAGCUGUUgUGGCC-GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 9991 | 0.74 | 0.34054 |
Target: 5'- aGCgugGCGggGUCGAaagUGCCGcGCGCCc -3' miRNA: 3'- -CGa--CGCuuUAGCUguuGUGGC-CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 8398 | 0.74 | 0.34054 |
Target: 5'- gGCUGCGuagccAGUCGGcCAGgGCCGuGCGCUu -3' miRNA: 3'- -CGACGCu----UUAGCU-GUUgUGGC-CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 13632 | 0.74 | 0.343933 |
Target: 5'- gGCUGCucaAGAUCGGCAaccagggcaagcgcgACGCCGugcGCGCCg -3' miRNA: 3'- -CGACGc--UUUAGCUGU---------------UGUGGC---CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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