Results 1 - 20 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26493 | 5' | -52.6 | NC_005357.1 | + | 41732 | 0.73 | 0.41294 |
Target: 5'- --gGCGguAUCuugGGCGGCccgGCCGGCGCCg -3' miRNA: 3'- cgaCGCuuUAG---CUGUUG---UGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 41662 | 0.66 | 0.780723 |
Target: 5'- cGCUGCGGAggacaucuaaAUgGACuggaaaGACcugGCCGGCGUUg -3' miRNA: 3'- -CGACGCUU----------UAgCUG------UUG---UGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 41431 | 0.73 | 0.384691 |
Target: 5'- cGCUGCGGugaaCcACGGCACCGGCcaggcgGCCa -3' miRNA: 3'- -CGACGCUuua-GcUGUUGUGGCCG------CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 41304 | 0.71 | 0.498351 |
Target: 5'- cGCUGCucauGAUCGACGGCaagccuuugccgccuACCGcCGCCa -3' miRNA: 3'- -CGACGcu--UUAGCUGUUG---------------UGGCcGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 41153 | 0.66 | 0.800872 |
Target: 5'- --gGuCGAGGgcCGGgAAUACCGGCGCUc -3' miRNA: 3'- cgaC-GCUUUa-GCUgUUGUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 40106 | 0.66 | 0.810672 |
Target: 5'- gGCUGCGcGAUCuguGCcuguCGCUGGaCGCCc -3' miRNA: 3'- -CGACGCuUUAGc--UGuu--GUGGCC-GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 39676 | 0.66 | 0.810672 |
Target: 5'- gGCaGUGG--UCGGCAcgcccgagcaGCGCCGG-GCCg -3' miRNA: 3'- -CGaCGCUuuAGCUGU----------UGUGGCCgCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 39613 | 0.66 | 0.794901 |
Target: 5'- gGCcGCGAgcaccuggcccgacgAAUCGACGaagugggcGCACCuGCGCa -3' miRNA: 3'- -CGaCGCU---------------UUAGCUGU--------UGUGGcCGCGg -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 39489 | 0.68 | 0.720052 |
Target: 5'- cGCUGCGAAcuggaacaacgggccGUCGAacucgaacgcgaaCAucgggGCGCgCGGCGUCu -3' miRNA: 3'- -CGACGCUU---------------UAGCU-------------GU-----UGUG-GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 39438 | 0.66 | 0.8097 |
Target: 5'- uGCUGCGcuauUCGGCGGCaACUGGaacaacaCGUCg -3' miRNA: 3'- -CGACGCuuu-AGCUGUUG-UGGCC-------GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 38883 | 0.69 | 0.614486 |
Target: 5'- uGCUGCGcuauUCGGCGGCGCCuGGaacggcaCGUCg -3' miRNA: 3'- -CGACGCuuu-AGCUGUUGUGG-CC-------GCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 38673 | 0.67 | 0.770398 |
Target: 5'- gGCUaCGuccagCGGCGGCACCGacGUGCCc -3' miRNA: 3'- -CGAcGCuuua-GCUGUUGUGGC--CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 38548 | 0.72 | 0.442435 |
Target: 5'- gGCgGCGA---CGGCAGCGCggccuacagcgaCGGCGCCu -3' miRNA: 3'- -CGaCGCUuuaGCUGUUGUG------------GCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 38394 | 0.71 | 0.526383 |
Target: 5'- gGCUGCGc--UCGACccgcgcggcauGACGCUGGUgGCCg -3' miRNA: 3'- -CGACGCuuuAGCUG-----------UUGUGGCCG-CGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 38210 | 0.67 | 0.738565 |
Target: 5'- uCUGCGA---CGAUGGCACgGugcGCGCCg -3' miRNA: 3'- cGACGCUuuaGCUGUUGUGgC---CGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37913 | 0.7 | 0.559429 |
Target: 5'- uCUGCGAug-CGcCaAGCGCCuguGGCGCCg -3' miRNA: 3'- cGACGCUuuaGCuG-UUGUGG---CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37750 | 0.69 | 0.615618 |
Target: 5'- cGCcGCGcuAUcCGGC-GCGCUGGUGCCc -3' miRNA: 3'- -CGaCGCuuUA-GCUGuUGUGGCCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37593 | 0.73 | 0.384691 |
Target: 5'- cGCUuuccGUGAAuUCGACGacgGCGCCGGCcCCg -3' miRNA: 3'- -CGA----CGCUUuAGCUGU---UGUGGCCGcGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37477 | 0.67 | 0.738565 |
Target: 5'- aGC-GCGAuacgCGGCuGCAUCguGGCGCCc -3' miRNA: 3'- -CGaCGCUuua-GCUGuUGUGG--CCGCGG- -5' |
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26493 | 5' | -52.6 | NC_005357.1 | + | 37159 | 0.7 | 0.593028 |
Target: 5'- cGCcGCGAAcAUCaACacgGugGCCGGUGCCa -3' miRNA: 3'- -CGaCGCUU-UAGcUG---UugUGGCCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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