miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26493 5' -52.6 NC_005357.1 + 24855 1.15 0.000538
Target:  5'- aGCUGCGAAAUCGACAACACCGGCGCCg -3'
miRNA:   3'- -CGACGCUUUAGCUGUUGUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 21664 0.72 0.452528
Target:  5'- cGC-GCGAugAGUCGagcgcggcGCAGCGCCucuacGGCGCCa -3'
miRNA:   3'- -CGaCGCU--UUAGC--------UGUUGUGG-----CCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 9559 0.72 0.483535
Target:  5'- --aGuCGGGcgCGACAAUcUCGGCGCCg -3'
miRNA:   3'- cgaC-GCUUuaGCUGUUGuGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 13854 0.66 0.820273
Target:  5'- cGCUGcCGGuggcCGACgugcgcgccgcgAugGCCGGCgGCCg -3'
miRNA:   3'- -CGAC-GCUuua-GCUG------------UugUGGCCG-CGG- -5'
26493 5' -52.6 NC_005357.1 + 6599 0.76 0.256744
Target:  5'- gGCUGCGGucuuuGUCGAUGACcaGCgGGCGCg -3'
miRNA:   3'- -CGACGCUu----UAGCUGUUG--UGgCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 23370 0.76 0.256744
Target:  5'- --gGCGAggacacgcuGAUCGACGcCGCCGGCgGCCg -3'
miRNA:   3'- cgaCGCU---------UUAGCUGUuGUGGCCG-CGG- -5'
26493 5' -52.6 NC_005357.1 + 30358 0.76 0.270621
Target:  5'- --aGCGAAA-CGGCAGgacacCAUCGGCGCCa -3'
miRNA:   3'- cgaCGCUUUaGCUGUU-----GUGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 36842 0.74 0.34054
Target:  5'- --gGCGGAcAUCGACAcgguggcggccaGCGuuGGCGCCg -3'
miRNA:   3'- cgaCGCUU-UAGCUGU------------UGUggCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 41431 0.73 0.384691
Target:  5'- cGCUGCGGugaaCcACGGCACCGGCcaggcgGCCa -3'
miRNA:   3'- -CGACGCUuua-GcUGUUGUGGCCG------CGG- -5'
26493 5' -52.6 NC_005357.1 + 37084 0.72 0.451513
Target:  5'- gGCUGUcgccaacGAcAUCGACAGCgugguauccgugGCCGGCGaCCu -3'
miRNA:   3'- -CGACG-------CUuUAGCUGUUG------------UGGCCGC-GG- -5'
26493 5' -52.6 NC_005357.1 + 23954 0.73 0.403382
Target:  5'- --gGUGGAcgaAUCGGcCGACgccGCCGGCGCCg -3'
miRNA:   3'- cgaCGCUU---UAGCU-GUUG---UGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 7137 0.74 0.365692
Target:  5'- --cGCGAAGUCGuCGGCugCGGCcuggaugaccaggGCCg -3'
miRNA:   3'- cgaCGCUUUAGCuGUUGugGCCG-------------CGG- -5'
26493 5' -52.6 NC_005357.1 + 34645 0.8 0.152354
Target:  5'- gGCgGCGAAGg-GugGACGCCGGCGCa -3'
miRNA:   3'- -CGaCGCUUUagCugUUGUGGCCGCGg -5'
26493 5' -52.6 NC_005357.1 + 41732 0.73 0.41294
Target:  5'- --gGCGguAUCuugGGCGGCccgGCCGGCGCCg -3'
miRNA:   3'- cgaCGCuuUAG---CUGUUG---UGGCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 15081 0.78 0.198106
Target:  5'- uGCUGCGAGGUCGGCccggccuacguggaaAGCAaCGcGCGCCu -3'
miRNA:   3'- -CGACGCUUUAGCUG---------------UUGUgGC-CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 13632 0.74 0.343933
Target:  5'- gGCUGCucaAGAUCGGCAaccagggcaagcgcgACGCCGugcGCGCCg -3'
miRNA:   3'- -CGACGc--UUUAGCUGU---------------UGUGGC---CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 38548 0.72 0.442435
Target:  5'- gGCgGCGA---CGGCAGCGCggccuacagcgaCGGCGCCu -3'
miRNA:   3'- -CGaCGCUuuaGCUGUUGUG------------GCCGCGG- -5'
26493 5' -52.6 NC_005357.1 + 27649 0.72 0.452528
Target:  5'- --aGCGAcaucgugaagcaGAUCGACAccgacACGCUGcGCGCCa -3'
miRNA:   3'- cgaCGCU------------UUAGCUGU-----UGUGGC-CGCGG- -5'
26493 5' -52.6 NC_005357.1 + 17769 0.77 0.250026
Target:  5'- cGCgGCGGGcgCGACAACACCauccuGGCccGCCg -3'
miRNA:   3'- -CGaCGCUUuaGCUGUUGUGG-----CCG--CGG- -5'
26493 5' -52.6 NC_005357.1 + 31963 0.76 0.263608
Target:  5'- uGCUGCGcGAcuUCcagGGCGACGCCaagGGCGCCa -3'
miRNA:   3'- -CGACGCuUU--AG---CUGUUGUGG---CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.