Results 21 - 40 of 156 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26495 | 5' | -61.2 | NC_005357.1 | + | 31055 | 0.73 | 0.126573 |
Target: 5'- uCGCCACCgaggUGCCgGGCGagcaGGUCGCCa -3' miRNA: 3'- uGCGGUGGaa--GCGG-CUGCa---CCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 7774 | 0.73 | 0.130059 |
Target: 5'- gGCGCgAUCUgCGCCGGCGUccacccuucGCCGCCc -3' miRNA: 3'- -UGCGgUGGAaGCGGCUGCAc--------CGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 34230 | 0.73 | 0.130059 |
Target: 5'- -gGCCGCCaugUCGCUGACGaacgGGCaggaCGCCa -3' miRNA: 3'- ugCGGUGGa--AGCGGCUGCa---CCG----GCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 39587 | 0.72 | 0.133633 |
Target: 5'- uCGCUgguGCUggCGCCGcugcGCGUGGCCGCg -3' miRNA: 3'- uGCGG---UGGaaGCGGC----UGCACCGGCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 36053 | 0.72 | 0.133633 |
Target: 5'- -gGCCugcGCCUgaUUGCCGACGUGGgccgguUCGCCa -3' miRNA: 3'- ugCGG---UGGA--AGCGGCUGCACC------GGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 28989 | 0.72 | 0.141053 |
Target: 5'- -gGCCGCCaa-GCUGGCG-GGCCuGCCg -3' miRNA: 3'- ugCGGUGGaagCGGCUGCaCCGG-CGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 20188 | 0.72 | 0.141053 |
Target: 5'- uACGCCAUCgcgGCCGACaaccagGGCCGCg -3' miRNA: 3'- -UGCGGUGGaagCGGCUGca----CCGGCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 18354 | 0.72 | 0.144514 |
Target: 5'- gAUGaCCACCUguUUGCCGGCGgcgagguUGGCCuuGCCg -3' miRNA: 3'- -UGC-GGUGGA--AGCGGCUGC-------ACCGG--CGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 27574 | 0.72 | 0.144903 |
Target: 5'- gGCGCC-Cag-CGUgCGGCGcUGGCCGCCa -3' miRNA: 3'- -UGCGGuGgaaGCG-GCUGC-ACCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 5559 | 0.72 | 0.148849 |
Target: 5'- cCGCCACgguaucgaCggCGCCaACGcUGGCCGCCa -3' miRNA: 3'- uGCGGUG--------GaaGCGGcUGC-ACCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 16038 | 0.72 | 0.151669 |
Target: 5'- -gGCCugCcaguuguaggccagUUCGCgcACGUGGCCGCCg -3' miRNA: 3'- ugCGGugG--------------AAGCGgcUGCACCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 14920 | 0.72 | 0.152892 |
Target: 5'- cGCGCCGagaa-GCUGGCGgccgaGGCCGCCg -3' miRNA: 3'- -UGCGGUggaagCGGCUGCa----CCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 18751 | 0.71 | 0.156616 |
Target: 5'- cGCGaCCACCUuuUUGCCGGCGauuucuuccaucgUcagcgucgaGGCCGCCa -3' miRNA: 3'- -UGC-GGUGGA--AGCGGCUGC-------------A---------CCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 5345 | 0.71 | 0.157035 |
Target: 5'- cAUGgCAUCg-CGCUG-CGUGGCCGCCu -3' miRNA: 3'- -UGCgGUGGaaGCGGCuGCACCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 16674 | 0.71 | 0.157035 |
Target: 5'- cCGCCGCCcagcagcgCGCCcaGCGUGcuGCCGCCg -3' miRNA: 3'- uGCGGUGGaa------GCGGc-UGCAC--CGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 19186 | 0.71 | 0.157035 |
Target: 5'- gUGCCGCCggCGUCGAUGauguucUGGCCGUUc -3' miRNA: 3'- uGCGGUGGaaGCGGCUGC------ACCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 38726 | 0.71 | 0.15872 |
Target: 5'- uGCGCCGCauggggcagcgcgUCGCCGugGUGGauuCGCa -3' miRNA: 3'- -UGCGGUGga-----------AGCGGCugCACCg--GCGg -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 13527 | 0.71 | 0.161279 |
Target: 5'- uUGCCGuCCg-CGCCGAacUGUcGGCCGCCu -3' miRNA: 3'- uGCGGU-GGaaGCGGCU--GCA-CCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 19266 | 0.71 | 0.165186 |
Target: 5'- gGCGUCgauGCUggaaUCGCCGuagaacaGCGUGGUCGCCu -3' miRNA: 3'- -UGCGG---UGGa---AGCGGC-------UGCACCGGCGG- -5' |
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26495 | 5' | -61.2 | NC_005357.1 | + | 28872 | 0.71 | 0.174176 |
Target: 5'- cGCGCCACgUccUCGCUgcuGGCGUaguugcuGGCCGUCg -3' miRNA: 3'- -UGCGGUGgA--AGCGG---CUGCA-------CCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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