miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 8882 0.7 0.331065
Target:  5'- gUUCGGCCuuGGC--GUCCCAcCACUGg -3'
miRNA:   3'- gAAGCCGGu-CCGguUAGGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33959 0.7 0.339304
Target:  5'- -gUCGGCugcggcaucgCAGGCCAc-CUCGACGCCGa -3'
miRNA:   3'- gaAGCCG----------GUCCGGUuaGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 25388 0.7 0.339304
Target:  5'- aUUCGGCCAagaaggugcGGCUcAUCCCGuuCACCu -3'
miRNA:   3'- gAAGCCGGU---------CCGGuUAGGGUu-GUGGc -5'
26496 5' -56.2 NC_005357.1 + 14830 0.7 0.364903
Target:  5'- cCUUCGcCCAGGUCGAUgCCGuuggcggccaGCGCCGc -3'
miRNA:   3'- -GAAGCcGGUCCGGUUAgGGU----------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14270 0.69 0.382696
Target:  5'- --aCGGCguGGUCGAUCUgAcCACCGg -3'
miRNA:   3'- gaaGCCGguCCGGUUAGGgUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4798 0.69 0.382696
Target:  5'- gCUUUGGCgUAGGCCAgcuuguagagGUCggggCCGGCGCCGu -3'
miRNA:   3'- -GAAGCCG-GUCCGGU----------UAG----GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4613 0.69 0.382696
Target:  5'- -gUCaGCCAGGCCAAUguuggCCC-GCGCUGc -3'
miRNA:   3'- gaAGcCGGUCCGGUUA-----GGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 9553 0.69 0.382696
Target:  5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3'
miRNA:   3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 23852 0.69 0.391806
Target:  5'- --aCGGCCAGGCCGucaCCgCGAgcgcggccucCACCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GG-GUU----------GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 27741 0.69 0.391806
Target:  5'- aCUgcaGGCCGGGCUucaagcgCUCAACACCc -3'
miRNA:   3'- -GAag-CCGGUCCGGuua----GGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 6233 0.69 0.391806
Target:  5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3'
miRNA:   3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 19210 0.69 0.401056
Target:  5'- --gUGGCCgAGGCCGAggCCGAauuCACCGa -3'
miRNA:   3'- gaaGCCGG-UCCGGUUagGGUU---GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 37224 0.69 0.401056
Target:  5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3'
miRNA:   3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 13767 0.69 0.401056
Target:  5'- --cUGGCgAGGCCG---CCGGCACCGa -3'
miRNA:   3'- gaaGCCGgUCCGGUuagGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 8828 0.69 0.410444
Target:  5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3'
miRNA:   3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 37175 0.69 0.410444
Target:  5'- --aCGGU--GGCCGGUgCCAACGCCa -3'
miRNA:   3'- gaaGCCGguCCGGUUAgGGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 4858 0.69 0.419968
Target:  5'- --gCGGCCAGcuuCCAAUCCU--CGCCGg -3'
miRNA:   3'- gaaGCCGGUCc--GGUUAGGGuuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 7238 0.69 0.419968
Target:  5'- aCUUCGGCCAcuGGCgCGggCCgAuguCGCCGg -3'
miRNA:   3'- -GAAGCCGGU--CCG-GUuaGGgUu--GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13369 0.69 0.429624
Target:  5'- gCUUCuGGaaaUAGGCCAugCCCAGCGCgCGg -3'
miRNA:   3'- -GAAG-CCg--GUCCGGUuaGGGUUGUG-GC- -5'
26496 5' -56.2 NC_005357.1 + 32314 0.69 0.429624
Target:  5'- -aUCGccGCCAucaaGGCCGgcGUCCCGACAaCCGc -3'
miRNA:   3'- gaAGC--CGGU----CCGGU--UAGGGUUGU-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.