miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 23897 1.1 0.000476
Target:  5'- aCUUCGGCCAGGCCAAUCCCAACACCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 29033 0.81 0.06878
Target:  5'- gCUUCGGCCAGGUCGAUaCCCAcCGgCGg -3'
miRNA:   3'- -GAAGCCGGUCCGGUUA-GGGUuGUgGC- -5'
26496 5' -56.2 NC_005357.1 + 28841 0.77 0.133454
Target:  5'- --gCGGCCGGacuuGCCGaagcuGUCCCAGCGCCGc -3'
miRNA:   3'- gaaGCCGGUC----CGGU-----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24720 0.76 0.149332
Target:  5'- -gUCGGUCGGGCCGcUUCCAccGCGCCu -3'
miRNA:   3'- gaAGCCGGUCCGGUuAGGGU--UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 696 0.75 0.1579
Target:  5'- --cCGGCCGGGCCg--CCCAagAUACCGc -3'
miRNA:   3'- gaaGCCGGUCCGGuuaGGGU--UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 31145 0.75 0.16691
Target:  5'- uUUCcGCCuaccuGGCCGagcGUCCCAGCGCCGc -3'
miRNA:   3'- gAAGcCGGu----CCGGU---UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 28957 0.75 0.181289
Target:  5'- -aUCGcCCAGGUCAugCCCGACACCGc -3'
miRNA:   3'- gaAGCcGGUCCGGUuaGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14099 0.74 0.186321
Target:  5'- ---aGGCCaAGGCCAucgagUCCGACGCCGa -3'
miRNA:   3'- gaagCCGG-UCCGGUua---GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 719 0.74 0.20216
Target:  5'- -gUCGGCCAcGGCCAAgUCgAGCGCCu -3'
miRNA:   3'- gaAGCCGGU-CCGGUUaGGgUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 32937 0.73 0.225088
Target:  5'- gUUCGGCCAGGgCGA-CCaCGGCugCGu -3'
miRNA:   3'- gAAGCCGGUCCgGUUaGG-GUUGugGC- -5'
26496 5' -56.2 NC_005357.1 + 10987 0.73 0.225088
Target:  5'- gUUCGGCCAGGCCGgAUUgCAugAgCGu -3'
miRNA:   3'- gAAGCCGGUCCGGU-UAGgGUugUgGC- -5'
26496 5' -56.2 NC_005357.1 + 33345 0.73 0.237358
Target:  5'- --aCGGCCucgcGGCCAGUgaggggaugcacCCCGAUACCGu -3'
miRNA:   3'- gaaGCCGGu---CCGGUUA------------GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 27350 0.73 0.243701
Target:  5'- ---aGGCCGGGCCGAccUCgCAGCACuCGu -3'
miRNA:   3'- gaagCCGGUCCGGUU--AGgGUUGUG-GC- -5'
26496 5' -56.2 NC_005357.1 + 18886 0.72 0.256809
Target:  5'- -gUCGGCCgAGGCCAucgaCCGcguGCGCCGc -3'
miRNA:   3'- gaAGCCGG-UCCGGUuag-GGU---UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 19606 0.72 0.262893
Target:  5'- -gUCGGCagcgcggcgaaguCGGGCCAGUC-CGGCACCa -3'
miRNA:   3'- gaAGCCG-------------GUCCGGUUAGgGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 17098 0.72 0.262893
Target:  5'- --cCGGCCuGGaCAAUCCCGgcgacgaGCGCCGg -3'
miRNA:   3'- gaaGCCGGuCCgGUUAGGGU-------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4866 0.72 0.263576
Target:  5'- --cCGGUCAGGUCGuugCCCAGCGCgGc -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GGGUUGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 24057 0.71 0.299595
Target:  5'- -aUCGGCaAGGCCAAcCUCGcCGCCGg -3'
miRNA:   3'- gaAGCCGgUCCGGUUaGGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 13166 0.71 0.322975
Target:  5'- -gUCGGCCAgugucGGCCGcgCUgGGCGCCc -3'
miRNA:   3'- gaAGCCGGU-----CCGGUuaGGgUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 14221 0.71 0.322975
Target:  5'- -gUCGGCguGGCCGA-CCUggacaaGGCGCCGc -3'
miRNA:   3'- gaAGCCGguCCGGUUaGGG------UUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.