miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 34802 0.68 0.459354
Target:  5'- ---aGGCCaAGGCCAcgugUCCGGCGCUGc -3'
miRNA:   3'- gaagCCGG-UCCGGUua--GGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 6233 0.69 0.391806
Target:  5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3'
miRNA:   3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 37224 0.69 0.401056
Target:  5'- --cCGGUugCAGGCCAGcaccaCCAGCACCa -3'
miRNA:   3'- gaaGCCG--GUCCGGUUag---GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 8828 0.69 0.410444
Target:  5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3'
miRNA:   3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 13369 0.69 0.429624
Target:  5'- gCUUCuGGaaaUAGGCCAugCCCAGCGCgCGg -3'
miRNA:   3'- -GAAG-CCg--GUCCGGUuaGGGUUGUG-GC- -5'
26496 5' -56.2 NC_005357.1 + 32314 0.69 0.429624
Target:  5'- -aUCGccGCCAucaaGGCCGgcGUCCCGACAaCCGc -3'
miRNA:   3'- gaAGC--CGGU----CCGGU--UAGGGUUGU-GGC- -5'
26496 5' -56.2 NC_005357.1 + 7697 0.68 0.439409
Target:  5'- --gCGGCCGGuaGCCcucgaaguGAUCCC-ACACCGc -3'
miRNA:   3'- gaaGCCGGUC--CGG--------UUAGGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 17833 0.68 0.439409
Target:  5'- -cUCGGgCGGGUUGAUgCCCGcCACCGu -3'
miRNA:   3'- gaAGCCgGUCCGGUUA-GGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14134 0.68 0.456331
Target:  5'- -gUCGGCCAgcggcuugccuuccGGCCG-UUCCAGCGCg- -3'
miRNA:   3'- gaAGCCGGU--------------CCGGUuAGGGUUGUGgc -5'
26496 5' -56.2 NC_005357.1 + 4613 0.69 0.382696
Target:  5'- -gUCaGCCAGGCCAAUguuggCCC-GCGCUGc -3'
miRNA:   3'- gaAGcCGGUCCGGUUA-----GGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 14830 0.7 0.364903
Target:  5'- cCUUCGcCCAGGUCGAUgCCGuuggcggccaGCGCCGc -3'
miRNA:   3'- -GAAGCcGGUCCGGUUAgGGU----------UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 33959 0.7 0.339304
Target:  5'- -gUCGGCugcggcaucgCAGGCCAc-CUCGACGCCGa -3'
miRNA:   3'- gaAGCCG----------GUCCGGUuaGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 28841 0.77 0.133454
Target:  5'- --gCGGCCGGacuuGCCGaagcuGUCCCAGCGCCGc -3'
miRNA:   3'- gaaGCCGGUC----CGGU-----UAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 24720 0.76 0.149332
Target:  5'- -gUCGGUCGGGCCGcUUCCAccGCGCCu -3'
miRNA:   3'- gaAGCCGGUCCGGUuAGGGU--UGUGGc -5'
26496 5' -56.2 NC_005357.1 + 696 0.75 0.1579
Target:  5'- --cCGGCCGGGCCg--CCCAagAUACCGc -3'
miRNA:   3'- gaaGCCGGUCCGGuuaGGGU--UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 10987 0.73 0.225088
Target:  5'- gUUCGGCCAGGCCGgAUUgCAugAgCGu -3'
miRNA:   3'- gAAGCCGGUCCGGU-UAGgGUugUgGC- -5'
26496 5' -56.2 NC_005357.1 + 32937 0.73 0.225088
Target:  5'- gUUCGGCCAGGgCGA-CCaCGGCugCGu -3'
miRNA:   3'- gAAGCCGGUCCgGUUaGG-GUUGugGC- -5'
26496 5' -56.2 NC_005357.1 + 27350 0.73 0.243701
Target:  5'- ---aGGCCGGGCCGAccUCgCAGCACuCGu -3'
miRNA:   3'- gaagCCGGUCCGGUU--AGgGUUGUG-GC- -5'
26496 5' -56.2 NC_005357.1 + 4866 0.72 0.263576
Target:  5'- --cCGGUCAGGUCGuugCCCAGCGCgGc -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GGGUUGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 13166 0.71 0.322975
Target:  5'- -gUCGGCCAgugucGGCCGcgCUgGGCGCCc -3'
miRNA:   3'- gaAGCCGGU-----CCGGUuaGGgUUGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.