miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26496 5' -56.2 NC_005357.1 + 696 0.75 0.1579
Target:  5'- --cCGGCCGGGCCg--CCCAagAUACCGc -3'
miRNA:   3'- gaaGCCGGUCCGGuuaGGGU--UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 719 0.74 0.20216
Target:  5'- -gUCGGCCAcGGCCAAgUCgAGCGCCu -3'
miRNA:   3'- gaAGCCGGU-CCGGUUaGGgUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 1195 0.66 0.565305
Target:  5'- -gUCGGCCGGGuuguuggaauaaCCGccCUCAugGCCGa -3'
miRNA:   3'- gaAGCCGGUCC------------GGUuaGGGUugUGGC- -5'
26496 5' -56.2 NC_005357.1 + 3780 0.66 0.609633
Target:  5'- -cUCGGUCGuGCCGAaagCCAGCGCCu -3'
miRNA:   3'- gaAGCCGGUcCGGUUag-GGUUGUGGc -5'
26496 5' -56.2 NC_005357.1 + 4613 0.69 0.382696
Target:  5'- -gUCaGCCAGGCCAAUguuggCCC-GCGCUGc -3'
miRNA:   3'- gaAGcCGGUCCGGUUA-----GGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4751 0.66 0.57191
Target:  5'- -cUCGGCCAcGGCCGcgauguucucggcGUucgcccacacugcgCCCAgcACGCCGg -3'
miRNA:   3'- gaAGCCGGU-CCGGU-------------UA--------------GGGU--UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4798 0.69 0.382696
Target:  5'- gCUUUGGCgUAGGCCAgcuuguagagGUCggggCCGGCGCCGu -3'
miRNA:   3'- -GAAGCCG-GUCCGGU----------UAG----GGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4858 0.69 0.419968
Target:  5'- --gCGGCCAGcuuCCAAUCCU--CGCCGg -3'
miRNA:   3'- gaaGCCGGUCc--GGUUAGGGuuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 4866 0.72 0.263576
Target:  5'- --cCGGUCAGGUCGuugCCCAGCGCgGc -3'
miRNA:   3'- gaaGCCGGUCCGGUua-GGGUUGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 5009 0.66 0.598498
Target:  5'- -gUCGGCgCAGuCCGcUUUCAGCGCCGc -3'
miRNA:   3'- gaAGCCG-GUCcGGUuAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 6233 0.69 0.391806
Target:  5'- cCUUCGGCCAGGg----CCUGcACGCCGg -3'
miRNA:   3'- -GAAGCCGGUCCgguuaGGGU-UGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 7238 0.69 0.419968
Target:  5'- aCUUCGGCCAcuGGCgCGggCCgAuguCGCCGg -3'
miRNA:   3'- -GAAGCCGGU--CCG-GUuaGGgUu--GUGGC- -5'
26496 5' -56.2 NC_005357.1 + 7697 0.68 0.439409
Target:  5'- --gCGGCCGGuaGCCcucgaaguGAUCCC-ACACCGc -3'
miRNA:   3'- gaaGCCGGUC--CGG--------UUAGGGuUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 8120 0.67 0.50062
Target:  5'- -cUCGGCCAuuucGGCgGugacuUCCCAGCccuuGCCGu -3'
miRNA:   3'- gaAGCCGGU----CCGgUu----AGGGUUG----UGGC- -5'
26496 5' -56.2 NC_005357.1 + 8828 0.69 0.410444
Target:  5'- -cUgGGUCGGGCCAG-CCgCAACGCgGg -3'
miRNA:   3'- gaAgCCGGUCCGGUUaGG-GUUGUGgC- -5'
26496 5' -56.2 NC_005357.1 + 8882 0.7 0.331065
Target:  5'- gUUCGGCCuuGGC--GUCCCAcCACUGg -3'
miRNA:   3'- gAAGCCGGu-CCGguUAGGGUuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 9546 0.66 0.598498
Target:  5'- gUUCGGCCAGuG-CGAUCUgcuCGCCGg -3'
miRNA:   3'- gAAGCCGGUC-CgGUUAGGguuGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 9553 0.69 0.382696
Target:  5'- cCUUCcaGUCGGGCgcgaCAAUCUCGGCGCCGa -3'
miRNA:   3'- -GAAGc-CGGUCCG----GUUAGGGUUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 9791 0.66 0.598498
Target:  5'- --gCGGCCAGGUCGcgC---ACGCCGa -3'
miRNA:   3'- gaaGCCGGUCCGGUuaGgguUGUGGC- -5'
26496 5' -56.2 NC_005357.1 + 10987 0.73 0.225088
Target:  5'- gUUCGGCCAGGCCGgAUUgCAugAgCGu -3'
miRNA:   3'- gAAGCCGGUCCGGU-UAGgGUugUgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.