miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26497 5' -48.7 NC_005357.1 + 23493 1.14 0.001673
Target:  5'- gUGUCCGAACUGACGAAAAACGCCAGCg -3'
miRNA:   3'- -ACAGGCUUGACUGCUUUUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 34237 0.79 0.319442
Target:  5'- aUGUC---GCUGACGAAcgggcaGGACGCCAGCg -3'
miRNA:   3'- -ACAGgcuUGACUGCUU------UUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 4687 0.78 0.391233
Target:  5'- cG-CCGGAUagcgcGGCGAGAAugGCCGGCa -3'
miRNA:   3'- aCaGGCUUGa----CUGCUUUUugCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 16759 0.77 0.441137
Target:  5'- -aUCCGccGGCUGAUGAcguacauGACGCCGGCa -3'
miRNA:   3'- acAGGC--UUGACUGCUuu-----UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 13760 0.77 0.441137
Target:  5'- cG-CCGcGCUGGCGAGGc-CGCCGGCa -3'
miRNA:   3'- aCaGGCuUGACUGCUUUuuGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 14922 0.76 0.483546
Target:  5'- cG-CCGAgaaGCUGGCGGccGAGGcCGCCGGCa -3'
miRNA:   3'- aCaGGCU---UGACUGCU--UUUU-GCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 14668 0.75 0.53913
Target:  5'- gUGUCCGAGCcgGACGAGGGcagcgaguuGCGCgAGg -3'
miRNA:   3'- -ACAGGCUUGa-CUGCUUUU---------UGCGgUCg -5'
26497 5' -48.7 NC_005357.1 + 34639 0.74 0.573514
Target:  5'- cUG-CUGGGC-GGCGAAGggugGACGCCGGCg -3'
miRNA:   3'- -ACaGGCUUGaCUGCUUU----UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 4838 0.74 0.585096
Target:  5'- cGUCguCGAAUUcACGGAAAGCGgCCAGCu -3'
miRNA:   3'- aCAG--GCUUGAcUGCUUUUUGC-GGUCG- -5'
26497 5' -48.7 NC_005357.1 + 31965 0.74 0.596723
Target:  5'- ---aCGAACUGgucACGGAAcgcgaacucGACGCCAGCg -3'
miRNA:   3'- acagGCUUGAC---UGCUUU---------UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 35244 0.73 0.620067
Target:  5'- cUGUCCcGGCUG-CGucAGGGCGUCAGCg -3'
miRNA:   3'- -ACAGGcUUGACuGCu-UUUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 24320 0.73 0.631763
Target:  5'- cGUaCCGGACggcGCGAAGGcguccugguucGCGCCGGCu -3'
miRNA:   3'- aCA-GGCUUGac-UGCUUUU-----------UGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 18448 0.73 0.655143
Target:  5'- --aCCGAAaacgUGACGGucgcGGCGCCGGCg -3'
miRNA:   3'- acaGGCUUg---ACUGCUuu--UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 23657 0.72 0.690002
Target:  5'- --cUCGAcGCUGACGAuggaaGAAAuCGCCGGCa -3'
miRNA:   3'- acaGGCU-UGACUGCU-----UUUU-GCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 42238 0.72 0.712948
Target:  5'- aUG-CUGA--UGGCGggGauGACGCCGGCa -3'
miRNA:   3'- -ACaGGCUugACUGCuuU--UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 35151 0.71 0.724293
Target:  5'- aGUCCGAccACcGcCGAGAAGCugcacaagGCCGGCg -3'
miRNA:   3'- aCAGGCU--UGaCuGCUUUUUG--------CGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 28395 0.71 0.768499
Target:  5'- aGUUCGAcGCcGGCGGcgcGGCGCCAGUa -3'
miRNA:   3'- aCAGGCU-UGaCUGCUuu-UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 17100 0.7 0.810171
Target:  5'- gGcCUGGACaaucccGGCGAcGAGCGCCGGUg -3'
miRNA:   3'- aCaGGCUUGa-----CUGCUuUUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 6538 0.7 0.810171
Target:  5'- aGUUCGAuGCUGGCGuu-GACGUagCAGCc -3'
miRNA:   3'- aCAGGCU-UGACUGCuuuUUGCG--GUCG- -5'
26497 5' -48.7 NC_005357.1 + 11744 0.7 0.814166
Target:  5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3'
miRNA:   3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.