miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26497 5' -48.7 NC_005357.1 + 130 0.66 0.956655
Target:  5'- uUGUCCcaAGCUacGGCGu--GGCGCCAGg -3'
miRNA:   3'- -ACAGGc-UUGA--CUGCuuuUUGCGGUCg -5'
26497 5' -48.7 NC_005357.1 + 164 0.68 0.89054
Target:  5'- gUGcCCaAGCUGccgcGCGcAGAAUGCCGGCg -3'
miRNA:   3'- -ACaGGcUUGAC----UGCuUUUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 329 0.66 0.942329
Target:  5'- cGUCa-GGCUGGCGGuggcguCGCgCAGCa -3'
miRNA:   3'- aCAGgcUUGACUGCUuuuu--GCG-GUCG- -5'
26497 5' -48.7 NC_005357.1 + 2195 0.66 0.956655
Target:  5'- --aCCGcAUuccagGGCGAGAAACGCCucGCg -3'
miRNA:   3'- acaGGCuUGa----CUGCUUUUUGCGGu-CG- -5'
26497 5' -48.7 NC_005357.1 + 4687 0.78 0.391233
Target:  5'- cG-CCGGAUagcgcGGCGAGAAugGCCGGCa -3'
miRNA:   3'- aCaGGCUUGa----CUGCUUUUugCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 4838 0.74 0.585096
Target:  5'- cGUCguCGAAUUcACGGAAAGCGgCCAGCu -3'
miRNA:   3'- aCAG--GCUUGAcUGCUUUUUGC-GGUCG- -5'
26497 5' -48.7 NC_005357.1 + 6355 0.68 0.882693
Target:  5'- cGUCUGGG-UGGCGAAccggcccACGUCGGCa -3'
miRNA:   3'- aCAGGCUUgACUGCUUuu-----UGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 6538 0.7 0.810171
Target:  5'- aGUUCGAuGCUGGCGuu-GACGUagCAGCc -3'
miRNA:   3'- aCAGGCU-UGACUGCuuuUUGCG--GUCG- -5'
26497 5' -48.7 NC_005357.1 + 6656 0.67 0.918914
Target:  5'- gUGUCCGcGCUcAUGGucuGCGCCAcGCc -3'
miRNA:   3'- -ACAGGCuUGAcUGCUuuuUGCGGU-CG- -5'
26497 5' -48.7 NC_005357.1 + 7889 0.66 0.936942
Target:  5'- cGUCCaGGGC-GGCGcgugcguAGAuCGCCAGCu -3'
miRNA:   3'- aCAGG-CUUGaCUGCu------UUUuGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 9622 0.67 0.905339
Target:  5'- aGUCCGAccgGCaGACGcgcAGCaCCAGCg -3'
miRNA:   3'- aCAGGCU---UGaCUGCuuuUUGcGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 10096 0.68 0.89809
Target:  5'- --cCUGGGC-GGCGGuugucGGGACGCCGGCc -3'
miRNA:   3'- acaGGCUUGaCUGCU-----UUUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 11744 0.7 0.814166
Target:  5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3'
miRNA:   3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 13059 0.7 0.820093
Target:  5'- aGUCCGAggGCUGGgGcAAGGCcaCCGGCg -3'
miRNA:   3'- aCAGGCU--UGACUgCuUUUUGc-GGUCG- -5'
26497 5' -48.7 NC_005357.1 + 13194 0.67 0.931245
Target:  5'- aGUggaCGGACUucuucGGCGGAcuGGACGCCAuGCg -3'
miRNA:   3'- aCAg--GCUUGA-----CUGCUU--UUUGCGGU-CG- -5'
26497 5' -48.7 NC_005357.1 + 13602 0.66 0.942329
Target:  5'- aGUCCGGccGCaacccGACGAcggcGCGCUGGCu -3'
miRNA:   3'- aCAGGCU--UGa----CUGCUuuu-UGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 13760 0.77 0.441137
Target:  5'- cG-CCGcGCUGGCGAGGc-CGCCGGCa -3'
miRNA:   3'- aCaGGCuUGACUGCUUUuuGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 14312 0.68 0.866134
Target:  5'- uUG-CUGAACUGGCGc---GCGCCuuGGCu -3'
miRNA:   3'- -ACaGGCUUGACUGCuuuuUGCGG--UCG- -5'
26497 5' -48.7 NC_005357.1 + 14668 0.75 0.53913
Target:  5'- gUGUCCGAGCcgGACGAGGGcagcgaguuGCGCgAGg -3'
miRNA:   3'- -ACAGGCUUGa-CUGCUUUU---------UGCGgUCg -5'
26497 5' -48.7 NC_005357.1 + 14922 0.76 0.483546
Target:  5'- cG-CCGAgaaGCUGGCGGccGAGGcCGCCGGCa -3'
miRNA:   3'- aCaGGCU---UGACUGCU--UUUU-GCGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.