miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26497 5' -48.7 NC_005357.1 + 23578 0.67 0.925236
Target:  5'- gGUgCGGGCggggGGCGAcGAugGCCGucauGCg -3'
miRNA:   3'- aCAgGCUUGa---CUGCUuUUugCGGU----CG- -5'
26497 5' -48.7 NC_005357.1 + 18950 0.68 0.87122
Target:  5'- aGUUCGGACacgucacauUGGCGAugcggacgacguAACGCCAGUc -3'
miRNA:   3'- aCAGGCUUG---------ACUGCUuu----------UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 41448 0.68 0.874555
Target:  5'- ---gCGGGCUGACGGuGAAGgGCUGGCu -3'
miRNA:   3'- acagGCUUGACUGCU-UUUUgCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 6355 0.68 0.882693
Target:  5'- cGUCUGGG-UGGCGAAccggcccACGUCGGCa -3'
miRNA:   3'- aCAGGCUUgACUGCUUuu-----UGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 18017 0.68 0.882693
Target:  5'- cGUCCGAACcuuGCGGGuucuUGUCGGCg -3'
miRNA:   3'- aCAGGCUUGac-UGCUUuuu-GCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 36007 0.68 0.885867
Target:  5'- gUGUCgCGAGCgagGACGAGuucgacgacaucaccGAggGCGCCgcGGCg -3'
miRNA:   3'- -ACAG-GCUUGa--CUGCUU---------------UU--UGCGG--UCG- -5'
26497 5' -48.7 NC_005357.1 + 22380 0.68 0.89809
Target:  5'- gUGUUCGAuUUGGCGAAAAuCaUCAGCa -3'
miRNA:   3'- -ACAGGCUuGACUGCUUUUuGcGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 6656 0.67 0.918914
Target:  5'- gUGUCCGcGCUcAUGGucuGCGCCAcGCc -3'
miRNA:   3'- -ACAGGCuUGAcUGCUuuuUGCGGU-CG- -5'
26497 5' -48.7 NC_005357.1 + 30405 0.67 0.918914
Target:  5'- cGUCCacGCuuucgcucggcaUGGCGAuGAGCGCgGGCa -3'
miRNA:   3'- aCAGGcuUG------------ACUGCUuUUUGCGgUCG- -5'
26497 5' -48.7 NC_005357.1 + 14312 0.68 0.866134
Target:  5'- uUG-CUGAACUGGCGc---GCGCCuuGGCu -3'
miRNA:   3'- -ACaGGCUUGACUGCuuuuUGCGG--UCG- -5'
26497 5' -48.7 NC_005357.1 + 35884 0.69 0.848476
Target:  5'- ---gCGGGCUGcuACGuc-AACGCCAGCa -3'
miRNA:   3'- acagGCUUGAC--UGCuuuUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 38106 0.69 0.839257
Target:  5'- aGcCCGcAACUGGau---GACGCCGGCa -3'
miRNA:   3'- aCaGGC-UUGACUgcuuuUUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 4687 0.78 0.391233
Target:  5'- cG-CCGGAUagcgcGGCGAGAAugGCCGGCa -3'
miRNA:   3'- aCaGGCUUGa----CUGCUUUUugCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 31965 0.74 0.596723
Target:  5'- ---aCGAACUGgucACGGAAcgcgaacucGACGCCAGCg -3'
miRNA:   3'- acagGCUUGAC---UGCUUU---------UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 18448 0.73 0.655143
Target:  5'- --aCCGAAaacgUGACGGucgcGGCGCCGGCg -3'
miRNA:   3'- acaGGCUUg---ACUGCUuu--UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 42238 0.72 0.712948
Target:  5'- aUG-CUGA--UGGCGggGauGACGCCGGCa -3'
miRNA:   3'- -ACaGGCUugACUGCuuU--UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 35151 0.71 0.724293
Target:  5'- aGUCCGAccACcGcCGAGAAGCugcacaagGCCGGCg -3'
miRNA:   3'- aCAGGCU--UGaCuGCUUUUUG--------CGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 28395 0.71 0.768499
Target:  5'- aGUUCGAcGCcGGCGGcgcGGCGCCAGUa -3'
miRNA:   3'- aCAGGCU-UGaCUGCUuu-UUGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 11744 0.7 0.814166
Target:  5'- uUGUgCGAACUGAuCGGcgacagguugcagcgGAuuUGCCGGCa -3'
miRNA:   3'- -ACAgGCUUGACU-GCU---------------UUuuGCGGUCG- -5'
26497 5' -48.7 NC_005357.1 + 15393 0.69 0.839257
Target:  5'- cGUgCGGGCcGGCGAAG-AUGCCGGa -3'
miRNA:   3'- aCAgGCUUGaCUGCUUUuUGCGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.