miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26502 5' -57.9 NC_005357.1 + 42217 0.68 0.354211
Target:  5'- gAGGUGCGCCAguucGCCGugucgcccGGCAGcGUgacGGUg -3'
miRNA:   3'- -UCCGCGCGGUa---CGGC--------UCGUU-CAa--CCG- -5'
26502 5' -57.9 NC_005357.1 + 41742 0.66 0.445716
Target:  5'- uGGGCG-GCCcgGCCG-GCGccgccguAGgcGGCc -3'
miRNA:   3'- -UCCGCgCGGuaCGGCuCGU-------UCaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 40402 0.69 0.305566
Target:  5'- gAGGCG-GCCGguaUGCCGGuGCuGG-UGGCg -3'
miRNA:   3'- -UCCGCgCGGU---ACGGCU-CGuUCaACCG- -5'
26502 5' -57.9 NC_005357.1 + 40175 0.67 0.398745
Target:  5'- uGGuGCGCGUCGaacUGCCGGcCAAGgcccGGCg -3'
miRNA:   3'- -UC-CGCGCGGU---ACGGCUcGUUCaa--CCG- -5'
26502 5' -57.9 NC_005357.1 + 38859 0.69 0.297974
Target:  5'- cGGCGCGUCGcugaaauuuaUGCgGcGCG-GUUGGCg -3'
miRNA:   3'- uCCGCGCGGU----------ACGgCuCGUuCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 37636 0.68 0.336582
Target:  5'- -cGCaGCGCCAgccggcgUGCUGGGCGcAGUgugGGCg -3'
miRNA:   3'- ucCG-CGCGGU-------ACGGCUCGU-UCAa--CCG- -5'
26502 5' -57.9 NC_005357.1 + 37042 0.69 0.329226
Target:  5'- cGGCGacgugagcacCGUCAgcacgcaccUGUCGAGCAuGUUGGCu -3'
miRNA:   3'- uCCGC----------GCGGU---------ACGGCUCGUuCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 36075 0.67 0.436855
Target:  5'- -aGCGCcccgGCCuucggGCCGGGCGcuUUGGCu -3'
miRNA:   3'- ucCGCG----CGGua---CGGCUCGUucAACCG- -5'
26502 5' -57.9 NC_005357.1 + 35344 0.73 0.180491
Target:  5'- uGGGCGCGCCGUggguagGCCGcGGCGucaugaAGUaccUGGCc -3'
miRNA:   3'- -UCCGCGCGGUA------CGGC-UCGU------UCA---ACCG- -5'
26502 5' -57.9 NC_005357.1 + 35192 0.66 0.463731
Target:  5'- cGGCccGCGCCAgugGCCGAaguuGCAgggcuucaucacgcAGUccgaUGGCa -3'
miRNA:   3'- uCCG--CGCGGUa--CGGCU----CGU--------------UCA----ACCG- -5'
26502 5' -57.9 NC_005357.1 + 34378 0.68 0.337407
Target:  5'- uGGGCGCGCguCAUGgaCGgcGGCAAGgacGGCg -3'
miRNA:   3'- -UCCGCGCG--GUACg-GC--UCGUUCaa-CCG- -5'
26502 5' -57.9 NC_005357.1 + 34356 0.67 0.431005
Target:  5'- cGuGCGCGCCuugggcggugaacugAUgGUCGAGCAgcGGUUGaGCg -3'
miRNA:   3'- uC-CGCGCGG---------------UA-CGGCUCGU--UCAAC-CG- -5'
26502 5' -57.9 NC_005357.1 + 33420 0.66 0.450681
Target:  5'- uGGUGCGCCGccUGCUGgaagcgcccccgcgcGGCGAGgaaaucgaGGCg -3'
miRNA:   3'- uCCGCGCGGU--ACGGC---------------UCGUUCaa------CCG- -5'
26502 5' -57.9 NC_005357.1 + 33210 0.7 0.28107
Target:  5'- cGGGCGCGCCgcagaacGUgcgccgcgccGCCGAGCAGGccaacgucgacGGCg -3'
miRNA:   3'- -UCCGCGCGG-------UA----------CGGCUCGUUCaa---------CCG- -5'
26502 5' -57.9 NC_005357.1 + 33121 0.66 0.456679
Target:  5'- cGuGCGcCGCCAggucGCCGAGgAAGUcaaUGcGCa -3'
miRNA:   3'- uC-CGC-GCGGUa---CGGCUCgUUCA---AC-CG- -5'
26502 5' -57.9 NC_005357.1 + 31978 0.67 0.398745
Target:  5'- aGGGCGaCGCCAagggcgccauUGCCaAGCu-GUUGGa -3'
miRNA:   3'- -UCCGC-GCGGU----------ACGGcUCGuuCAACCg -5'
26502 5' -57.9 NC_005357.1 + 31686 0.67 0.389555
Target:  5'- cGaGCGCGCCcuUGgCGAGCAGcaaGGCg -3'
miRNA:   3'- uC-CGCGCGGu-ACgGCUCGUUcaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 31051 0.69 0.297974
Target:  5'- cAGGU-CGCCAccgaggUGCCGGGCGAGcaGGUc -3'
miRNA:   3'- -UCCGcGCGGU------ACGGCUCGUUCaaCCG- -5'
26502 5' -57.9 NC_005357.1 + 30121 0.67 0.421358
Target:  5'- gAGGcCGCGCCAgaacacgccGCCGGccugcaccGCGucggacaucagcggcAGUUGGCg -3'
miRNA:   3'- -UCC-GCGCGGUa--------CGGCU--------CGU---------------UCAACCG- -5'
26502 5' -57.9 NC_005357.1 + 29805 0.74 0.140653
Target:  5'- cGGCaGCaGCgAUGCCGAGCGcGUcGGCg -3'
miRNA:   3'- uCCG-CG-CGgUACGGCUCGUuCAaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.