miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26503 5' -56 NC_005357.1 + 22177 1.11 0.000344
Target:  5'- aGCAGCAACAGCCGACCCAGGAGCAAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUGGGUCCUCGUUC- -5'
26503 5' -56 NC_005357.1 + 16643 0.75 0.177679
Target:  5'- uGguGCAGguGCCGGCCgacgaGGGAGCGGa -3'
miRNA:   3'- -CguCGUUguCGGCUGGg----UCCUCGUUc -5'
26503 5' -56 NC_005357.1 + 4047 0.73 0.208942
Target:  5'- cGCGGCgAGCGGCaggccagCGGCCCAGGGGgGAu -3'
miRNA:   3'- -CGUCG-UUGUCG-------GCUGGGUCCUCgUUc -5'
26503 5' -56 NC_005357.1 + 14590 0.72 0.246141
Target:  5'- aGCAGCGgcGCGGCCGGCgCCAccGcGGGCAGc -3'
miRNA:   3'- -CGUCGU--UGUCGGCUG-GGU--C-CUCGUUc -5'
26503 5' -56 NC_005357.1 + 19427 0.72 0.252739
Target:  5'- cGCAGCAGCAgGCCGACCa---GGCGAa -3'
miRNA:   3'- -CGUCGUUGU-CGGCUGGguccUCGUUc -5'
26503 5' -56 NC_005357.1 + 31270 0.72 0.273406
Target:  5'- cGCAcGCAacgugcGCAGgCGGCCCAGcAGCAGGc -3'
miRNA:   3'- -CGU-CGU------UGUCgGCUGGGUCcUCGUUC- -5'
26503 5' -56 NC_005357.1 + 8674 0.71 0.287924
Target:  5'- uGCAGCGGCuGCUGcgccGCCCAGGuguGCGc- -3'
miRNA:   3'- -CGUCGUUGuCGGC----UGGGUCCu--CGUuc -5'
26503 5' -56 NC_005357.1 + 36047 0.71 0.287924
Target:  5'- cGCcGCGGCGGCCGACCU-GGuGUAAc -3'
miRNA:   3'- -CGuCGUUGUCGGCUGGGuCCuCGUUc -5'
26503 5' -56 NC_005357.1 + 12011 0.71 0.295407
Target:  5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3'
miRNA:   3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5'
26503 5' -56 NC_005357.1 + 28964 0.71 0.310826
Target:  5'- uGCAGCGACAuGCCGACuuucagCCAGGuGUc-- -3'
miRNA:   3'- -CGUCGUUGU-CGGCUG------GGUCCuCGuuc -5'
26503 5' -56 NC_005357.1 + 37636 0.7 0.360704
Target:  5'- cGCAGCGcCAGCCGGCgugCUGGGcGCAGu -3'
miRNA:   3'- -CGUCGUuGUCGGCUG---GGUCCuCGUUc -5'
26503 5' -56 NC_005357.1 + 41231 0.7 0.369541
Target:  5'- gGCGGUuauuccaacAACccGGCCGACCCcGGcGGCGAGa -3'
miRNA:   3'- -CGUCG---------UUG--UCGGCUGGGuCC-UCGUUC- -5'
26503 5' -56 NC_005357.1 + 39502 0.69 0.378525
Target:  5'- cGCGGUGugGGCCGGCaUGGGAauggGCAAGa -3'
miRNA:   3'- -CGUCGUugUCGGCUGgGUCCU----CGUUC- -5'
26503 5' -56 NC_005357.1 + 22211 0.69 0.387655
Target:  5'- -aGGcCAACAGCCGGCCgCGGGcGCu-- -3'
miRNA:   3'- cgUC-GUUGUCGGCUGG-GUCCuCGuuc -5'
26503 5' -56 NC_005357.1 + 37282 0.69 0.396928
Target:  5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3'
miRNA:   3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5'
26503 5' -56 NC_005357.1 + 37474 0.69 0.396928
Target:  5'- aGCAGCGcgauacGCGGCUGcaucguggcGCCCGaGGGCAAGa -3'
miRNA:   3'- -CGUCGU------UGUCGGC---------UGGGUcCUCGUUC- -5'
26503 5' -56 NC_005357.1 + 18582 0.69 0.404448
Target:  5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3'
miRNA:   3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5'
26503 5' -56 NC_005357.1 + 10831 0.69 0.405394
Target:  5'- aGCAGCAgguAgGGCCagaagcaGGCCCAGGcgAGCAGc -3'
miRNA:   3'- -CGUCGU---UgUCGG-------CUGGGUCC--UCGUUc -5'
26503 5' -56 NC_005357.1 + 32100 0.69 0.406342
Target:  5'- cGCAGCGACGGCuaCGGCCUGGcGAaacugGCGAa -3'
miRNA:   3'- -CGUCGUUGUCG--GCUGGGUC-CU-----CGUUc -5'
26503 5' -56 NC_005357.1 + 15362 0.69 0.415896
Target:  5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3'
miRNA:   3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.