miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26503 5' -56 NC_005357.1 + 8234 0.66 0.584321
Target:  5'- gGCGGCcgucAGCAGCuugcgcuucaagCGGCCCAGGuGUucGa -3'
miRNA:   3'- -CGUCG----UUGUCG------------GCUGGGUCCuCGuuC- -5'
26503 5' -56 NC_005357.1 + 24076 0.66 0.551009
Target:  5'- aCAGUAGCGG-CGACCgCGcGGGGCAc- -3'
miRNA:   3'- cGUCGUUGUCgGCUGG-GU-CCUCGUuc -5'
26503 5' -56 NC_005357.1 + 5948 0.66 0.562057
Target:  5'- aGC-GCAACGGuguaguCCGuACCCAGGGuCAAGg -3'
miRNA:   3'- -CGuCGUUGUC------GGC-UGGGUCCUcGUUC- -5'
26503 5' -56 NC_005357.1 + 33781 0.66 0.562057
Target:  5'- aCAGCGaguACGGCgCGGCCUGGG-GCGu- -3'
miRNA:   3'- cGUCGU---UGUCG-GCUGGGUCCuCGUuc -5'
26503 5' -56 NC_005357.1 + 16224 0.66 0.573164
Target:  5'- -gAGCAGCAGCa-ACUCGGuGAGCGGc -3'
miRNA:   3'- cgUCGUUGUCGgcUGGGUC-CUCGUUc -5'
26503 5' -56 NC_005357.1 + 11418 0.66 0.573164
Target:  5'- aGCAGCGGCgAGCCGGCgugCAGGucGCc-- -3'
miRNA:   3'- -CGUCGUUG-UCGGCUGg--GUCCu-CGuuc -5'
26503 5' -56 NC_005357.1 + 689 0.66 0.573164
Target:  5'- gGCGGCGccgGCcgGGCCGcccaagauaccGCCCAGGAuaGGGg -3'
miRNA:   3'- -CGUCGU---UG--UCGGC-----------UGGGUCCUcgUUC- -5'
26503 5' -56 NC_005357.1 + 33011 0.66 0.573164
Target:  5'- cCAGCGACAGCaucaCGAUgCUGGGcGGCAAGu -3'
miRNA:   3'- cGUCGUUGUCG----GCUG-GGUCC-UCGUUC- -5'
26503 5' -56 NC_005357.1 + 24562 0.66 0.573164
Target:  5'- cGCGGCGAUggcgaGGCCGGCCaCGGucGGGCc-- -3'
miRNA:   3'- -CGUCGUUG-----UCGGCUGG-GUC--CUCGuuc -5'
26503 5' -56 NC_005357.1 + 10956 0.67 0.529123
Target:  5'- cGCGGCGACAGCCGGggacaCUGGGccaccuguucGGCcAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUg----GGUCC----------UCGuUC- -5'
26503 5' -56 NC_005357.1 + 6921 0.67 0.528037
Target:  5'- -aGGCAuuGCGGCCGACCCAuuccuucGuGGCAGa -3'
miRNA:   3'- cgUCGU--UGUCGGCUGGGU-------CcUCGUUc -5'
26503 5' -56 NC_005357.1 + 6591 0.67 0.518299
Target:  5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3'
miRNA:   3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5'
26503 5' -56 NC_005357.1 + 36047 0.71 0.287924
Target:  5'- cGCcGCGGCGGCCGACCU-GGuGUAAc -3'
miRNA:   3'- -CGuCGUUGUCGGCUGGGuCCuCGUUc -5'
26503 5' -56 NC_005357.1 + 12011 0.71 0.295407
Target:  5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3'
miRNA:   3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5'
26503 5' -56 NC_005357.1 + 28964 0.71 0.310826
Target:  5'- uGCAGCGACAuGCCGACuuucagCCAGGuGUc-- -3'
miRNA:   3'- -CGUCGUUGU-CGGCUG------GGUCCuCGuuc -5'
26503 5' -56 NC_005357.1 + 39502 0.69 0.378525
Target:  5'- cGCGGUGugGGCCGGCaUGGGAauggGCAAGa -3'
miRNA:   3'- -CGUCGUugUCGGCUGgGUCCU----CGUUC- -5'
26503 5' -56 NC_005357.1 + 37282 0.69 0.396928
Target:  5'- aGCAGCGACGGCCG-CCUGcGcGGCAc- -3'
miRNA:   3'- -CGUCGUUGUCGGCuGGGU-CcUCGUuc -5'
26503 5' -56 NC_005357.1 + 37474 0.69 0.396928
Target:  5'- aGCAGCGcgauacGCGGCUGcaucguggcGCCCGaGGGCAAGa -3'
miRNA:   3'- -CGUCGU------UGUCGGC---------UGGGUcCUCGUUC- -5'
26503 5' -56 NC_005357.1 + 18582 0.69 0.404448
Target:  5'- cGCGGUGACGGCCuGGCCguccgagacuuGGAGCAGu -3'
miRNA:   3'- -CGUCGUUGUCGG-CUGGgu---------CCUCGUUc -5'
26503 5' -56 NC_005357.1 + 32442 0.67 0.51507
Target:  5'- gGCAGCGACuGCCccuacGCCCccuacugccgagguGGGGGCGGc -3'
miRNA:   3'- -CGUCGUUGuCGGc----UGGG--------------UCCUCGUUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.