miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26503 5' -56 NC_005357.1 + 689 0.66 0.573164
Target:  5'- gGCGGCGccgGCcgGGCCGcccaagauaccGCCCAGGAuaGGGg -3'
miRNA:   3'- -CGUCGU---UG--UCGGC-----------UGGGUCCUcgUUC- -5'
26503 5' -56 NC_005357.1 + 2660 0.66 0.577621
Target:  5'- -gGGcCAGCGGUCG-CCCAGGuguucgaucagccacGGCAGGu -3'
miRNA:   3'- cgUC-GUUGUCGGCuGGGUCC---------------UCGUUC- -5'
26503 5' -56 NC_005357.1 + 4047 0.73 0.208942
Target:  5'- cGCGGCgAGCGGCaggccagCGGCCCAGGGGgGAu -3'
miRNA:   3'- -CGUCG-UUGUCG-------GCUGGGUCCUCgUUc -5'
26503 5' -56 NC_005357.1 + 5085 0.68 0.424611
Target:  5'- uGCGGUuggaacaGGCGGCCGGCCCAgcguccGGuGCGGc -3'
miRNA:   3'- -CGUCG-------UUGUCGGCUGGGU------CCuCGUUc -5'
26503 5' -56 NC_005357.1 + 5948 0.66 0.562057
Target:  5'- aGC-GCAACGGuguaguCCGuACCCAGGGuCAAGg -3'
miRNA:   3'- -CGuCGUUGUC------GGC-UGGGUCCUcGUUC- -5'
26503 5' -56 NC_005357.1 + 6591 0.67 0.518299
Target:  5'- cCAGCA-CGGCCGGCaCCAcguaGAGCAu- -3'
miRNA:   3'- cGUCGUuGUCGGCUG-GGUc---CUCGUuc -5'
26503 5' -56 NC_005357.1 + 6921 0.67 0.528037
Target:  5'- -aGGCAuuGCGGCCGACCCAuuccuucGuGGCAGa -3'
miRNA:   3'- cgUCGU--UGUCGGCUGGGU-------CcUCGUUc -5'
26503 5' -56 NC_005357.1 + 8234 0.66 0.584321
Target:  5'- gGCGGCcgucAGCAGCuugcgcuucaagCGGCCCAGGuGUucGa -3'
miRNA:   3'- -CGUCG----UUGUCG------------GCUGGGUCCuCGuuC- -5'
26503 5' -56 NC_005357.1 + 8674 0.71 0.287924
Target:  5'- uGCAGCGGCuGCUGcgccGCCCAGGuguGCGc- -3'
miRNA:   3'- -CGUCGUUGuCGGC----UGGGUCCu--CGUuc -5'
26503 5' -56 NC_005357.1 + 9240 0.68 0.45544
Target:  5'- cCAGCggUGGCCGugCCGaGGGCGc- -3'
miRNA:   3'- cGUCGuuGUCGGCugGGUcCUCGUuc -5'
26503 5' -56 NC_005357.1 + 10079 0.68 0.425585
Target:  5'- gGCGGCGACcGCagCGACCUGGGcGGCGGu -3'
miRNA:   3'- -CGUCGUUGuCG--GCUGGGUCC-UCGUUc -5'
26503 5' -56 NC_005357.1 + 10831 0.69 0.405394
Target:  5'- aGCAGCAgguAgGGCCagaagcaGGCCCAGGcgAGCAGc -3'
miRNA:   3'- -CGUCGU---UgUCGG-------CUGGGUCC--UCGUUc -5'
26503 5' -56 NC_005357.1 + 10910 0.68 0.475958
Target:  5'- aCGGCAacACAGCgaGGCCCAGcAGCAc- -3'
miRNA:   3'- cGUCGU--UGUCGg-CUGGGUCcUCGUuc -5'
26503 5' -56 NC_005357.1 + 10956 0.67 0.529123
Target:  5'- cGCGGCGACAGCCGGggacaCUGGGccaccuguucGGCcAGg -3'
miRNA:   3'- -CGUCGUUGUCGGCUg----GGUCC----------UCGuUC- -5'
26503 5' -56 NC_005357.1 + 11418 0.66 0.573164
Target:  5'- aGCAGCGGCgAGCCGGCgugCAGGucGCc-- -3'
miRNA:   3'- -CGUCGUUG-UCGGCUGg--GUCCu-CGuuc -5'
26503 5' -56 NC_005357.1 + 12011 0.71 0.295407
Target:  5'- uCGGcCAGCAGCgCGGCCguGGccGGCGAGg -3'
miRNA:   3'- cGUC-GUUGUCG-GCUGGguCC--UCGUUC- -5'
26503 5' -56 NC_005357.1 + 13538 0.66 0.551009
Target:  5'- uCGGCGACGGCCagcaacuACgCCAGcAGCGAGg -3'
miRNA:   3'- cGUCGUUGUCGGc------UG-GGUCcUCGUUC- -5'
26503 5' -56 NC_005357.1 + 14590 0.72 0.246141
Target:  5'- aGCAGCGgcGCGGCCGGCgCCAccGcGGGCAGc -3'
miRNA:   3'- -CGUCGU--UGUCGGCUG-GGU--C-CUCGUUc -5'
26503 5' -56 NC_005357.1 + 15362 0.69 0.415896
Target:  5'- cCAGCAGgGGCUGACgCCcuGAGCAu- -3'
miRNA:   3'- cGUCGUUgUCGGCUG-GGucCUCGUuc -5'
26503 5' -56 NC_005357.1 + 16152 0.66 0.59552
Target:  5'- cGCGcGCGAUgcgcgAGCCGACC-AGGccGGCGGGu -3'
miRNA:   3'- -CGU-CGUUG-----UCGGCUGGgUCC--UCGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.