miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26504 5' -62.4 NC_005357.1 + 5353 0.7 0.140646
Target:  5'- cGCgCUGCGugGCCGCCUGcaccGCGcccAGGGu -3'
miRNA:   3'- cUG-GACGCugCGGCGGAC----CGC---UCCUu -5'
26504 5' -62.4 NC_005357.1 + 23934 0.71 0.109731
Target:  5'- aGGCgUGauggucaGGCGCCGCCcGGCGAGGu- -3'
miRNA:   3'- -CUGgACg------CUGCGGCGGaCCGCUCCuu -5'
26504 5' -62.4 NC_005357.1 + 13483 0.72 0.103783
Target:  5'- uGACCUggGCGAUGCCGaCCgcgccuuugGGCGAGGu- -3'
miRNA:   3'- -CUGGA--CGCUGCGGC-GGa--------CCGCUCCuu -5'
26504 5' -62.4 NC_005357.1 + 37558 0.72 0.100924
Target:  5'- --aUUGCGugGCuCGCC-GGCGAGGAu -3'
miRNA:   3'- cugGACGCugCG-GCGGaCCGCUCCUu -5'
26504 5' -62.4 NC_005357.1 + 13738 0.74 0.069737
Target:  5'- cGACCUugugaacgacgugGCG-CGCCGCgCUGGCGAGGc- -3'
miRNA:   3'- -CUGGA-------------CGCuGCGGCG-GACCGCUCCuu -5'
26504 5' -62.4 NC_005357.1 + 11693 0.74 0.067973
Target:  5'- aGACUgcgGCGGacuuaGCCGCUUGGCGAGGu- -3'
miRNA:   3'- -CUGGa--CGCUg----CGGCGGACCGCUCCuu -5'
26504 5' -62.4 NC_005357.1 + 21821 0.98 0.000868
Target:  5'- cGACCUGCGACGCCGCCUGGCGaAGGAu -3'
miRNA:   3'- -CUGGACGCUGCGGCGGACCGC-UCCUu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.