miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26506 5' -61.7 NC_005357.1 + 28079 0.67 0.280513
Target:  5'- uUCCAgGacaccgCGaaccaGCAGGCCCggcaguucagccaaGGCGCGCg -3'
miRNA:   3'- -AGGUaCga----GCg----CGUCCGGG--------------UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 27832 0.69 0.182384
Target:  5'- ---cUGCcCGCGguGGCgCCGGCcGCGCc -3'
miRNA:   3'- agguACGaGCGCguCCG-GGUCG-CGCG- -5'
26506 5' -61.7 NC_005357.1 + 27438 0.72 0.113027
Target:  5'- gCCcgGCggcCGCAGGCCCuggcgcugguaugccAGCGCGCc -3'
miRNA:   3'- aGGuaCGagcGCGUCCGGG---------------UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 27396 0.67 0.273609
Target:  5'- aUCCAUGUcgcucuuguagucgUCGCGC--GCCUGGCGCa- -3'
miRNA:   3'- -AGGUACG--------------AGCGCGucCGGGUCGCGcg -5'
26506 5' -61.7 NC_005357.1 + 26358 0.68 0.23684
Target:  5'- aUCUAcgGCgccgCGCGCGGcGgCCAcGUGCGCg -3'
miRNA:   3'- -AGGUa-CGa---GCGCGUC-CgGGU-CGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 25924 0.75 0.067209
Target:  5'- -gCA-GCUUGCGguGGCCCAGCaugucccGCGCu -3'
miRNA:   3'- agGUaCGAGCGCguCCGGGUCG-------CGCG- -5'
26506 5' -61.7 NC_005357.1 + 24955 0.79 0.031937
Target:  5'- gCCGcUGUUCGUGCAGGCCCuGGCGUGg -3'
miRNA:   3'- aGGU-ACGAGCGCGUCCGGG-UCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 24615 0.66 0.319417
Target:  5'- cCCGaggGUUcCGUGCAGGCggaauaCuGCGCGCg -3'
miRNA:   3'- aGGUa--CGA-GCGCGUCCGg-----GuCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 24436 0.68 0.236233
Target:  5'- gUCgGUGC-CGCGCGcGGCCuCGGCGacauugaCGCc -3'
miRNA:   3'- -AGgUACGaGCGCGU-CCGG-GUCGC-------GCG- -5'
26506 5' -61.7 NC_005357.1 + 24341 0.7 0.155288
Target:  5'- gUCCugGUUCGCGCcggcuucggcGGCCCAGCaCGCa -3'
miRNA:   3'- -AGGuaCGAGCGCGu---------CCGGGUCGcGCG- -5'
26506 5' -61.7 NC_005357.1 + 24136 0.78 0.039101
Target:  5'- gUCCAgccgGCUgCGCGCcuGGCCCAGCGCc- -3'
miRNA:   3'- -AGGUa---CGA-GCGCGu-CCGGGUCGCGcg -5'
26506 5' -61.7 NC_005357.1 + 24063 0.68 0.236233
Target:  5'- uUCCAUGC-CGCGCAcaguagcGGCgaCC-GCGCGg -3'
miRNA:   3'- -AGGUACGaGCGCGU-------CCG--GGuCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 23756 0.66 0.289695
Target:  5'- gCCAUGCcggCGCcacCGGGCCgAuGCGcCGCg -3'
miRNA:   3'- aGGUACGa--GCGc--GUCCGGgU-CGC-GCG- -5'
26506 5' -61.7 NC_005357.1 + 23717 0.66 0.296917
Target:  5'- cCCA-GgUCGCGggcCAGuGCCUcgguGGCGCGCa -3'
miRNA:   3'- aGGUaCgAGCGC---GUC-CGGG----UCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 23086 0.68 0.236233
Target:  5'- -aCAUGCUCGCcccgacgccaacgGCGGcGCCCAcgGCGacaGCg -3'
miRNA:   3'- agGUACGAGCG-------------CGUC-CGGGU--CGCg--CG- -5'
26506 5' -61.7 NC_005357.1 + 22665 0.69 0.208078
Target:  5'- aUCCAgcuuucgcGCUCgguGCGCAGuugccCCCAGCGCGa -3'
miRNA:   3'- -AGGUa-------CGAG---CGCGUCc----GGGUCGCGCg -5'
26506 5' -61.7 NC_005357.1 + 22044 0.69 0.192307
Target:  5'- gCCAUGUugcggucgUCGCGCuugcucGGGUcgcggUCGGCGCGCg -3'
miRNA:   3'- aGGUACG--------AGCGCG------UCCG-----GGUCGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 21730 0.68 0.230832
Target:  5'- cCCGUGcCUCGuCGUccaGCCCAuagaguGCGCGCa -3'
miRNA:   3'- aGGUAC-GAGC-GCGuc-CGGGU------CGCGCG- -5'
26506 5' -61.7 NC_005357.1 + 21247 0.66 0.289695
Target:  5'- aCCAgcagcagGCcgCGCaGCAGGCcgcgcuguugaaCCAGgGCGCg -3'
miRNA:   3'- aGGUa------CGa-GCG-CGUCCG------------GGUCgCGCG- -5'
26506 5' -61.7 NC_005357.1 + 21151 0.67 0.262186
Target:  5'- gCCGUGUcCGCGCccuGGUucaaCAGCGCGg -3'
miRNA:   3'- aGGUACGaGCGCGu--CCGg---GUCGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.