Results 21 - 40 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26506 | 5' | -61.7 | NC_005357.1 | + | 16667 | 0.69 | 0.202701 |
Target: 5'- aUCguUGC-CGCcgcccaGCAGcgcGCCCAGCGUGCu -3' miRNA: 3'- -AGguACGaGCG------CGUC---CGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 32416 | 0.69 | 0.187288 |
Target: 5'- aCCAgg---GCGgGGGCCgGGCGCGCg -3' miRNA: 3'- aGGUacgagCGCgUCCGGgUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 7770 | 0.71 | 0.13189 |
Target: 5'- aUCCAgGCUCGCGCcuucGCCCuGCGagGCg -3' miRNA: 3'- -AGGUaCGAGCGCGuc--CGGGuCGCg-CG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 2556 | 0.74 | 0.089412 |
Target: 5'- aCCuugGCaUGUGCGacacGGCCCAGCGCGUg -3' miRNA: 3'- aGGua-CGaGCGCGU----CCGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 18278 | 0.67 | 0.268858 |
Target: 5'- gCCGU-CgagGCGCuGGGCCaGGCGCGCa -3' miRNA: 3'- aGGUAcGag-CGCG-UCCGGgUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 21730 | 0.68 | 0.230832 |
Target: 5'- cCCGUGcCUCGuCGUccaGCCCAuagaguGCGCGCa -3' miRNA: 3'- aGGUAC-GAGC-GCGuc-CGGGU------CGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 18348 | 0.7 | 0.172916 |
Target: 5'- cCCGUGCccCGCGCGGucGCCgCuacuGUGCGCg -3' miRNA: 3'- aGGUACGa-GCGCGUC--CGG-Gu---CGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 36153 | 0.76 | 0.060144 |
Target: 5'- aCC-UGUUCG-GCcuGCCCAGCGCGCa -3' miRNA: 3'- aGGuACGAGCgCGucCGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 18650 | 0.68 | 0.224954 |
Target: 5'- aUCCAUcuucguagccGCg-GCGCAucGGCCCGGUgGCGCc -3' miRNA: 3'- -AGGUA----------CGagCGCGU--CCGGGUCG-CGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 24955 | 0.79 | 0.031937 |
Target: 5'- gCCGcUGUUCGUGCAGGCCCuGGCGUGg -3' miRNA: 3'- aGGU-ACGAGCGCGUCCGGG-UCGCGCg -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 29231 | 0.69 | 0.184332 |
Target: 5'- -aCAUGCagGCGUacaacgccggccaagGGcGCCCAGCGCGg -3' miRNA: 3'- agGUACGagCGCG---------------UC-CGGGUCGCGCg -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 5617 | 0.68 | 0.213579 |
Target: 5'- --gGUGCguuUCGCGCGuGGCgCGGCGCaGCu -3' miRNA: 3'- aggUACG---AGCGCGU-CCGgGUCGCG-CG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 13060 | 0.7 | 0.172916 |
Target: 5'- gUCCGaggGCUgGgGCaAGGCcaCCGGCGCGUg -3' miRNA: 3'- -AGGUa--CGAgCgCG-UCCG--GGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 35246 | 0.71 | 0.139304 |
Target: 5'- gUCCcgGCU-GCGUcaGGGCgUCAGCGCGUc -3' miRNA: 3'- -AGGuaCGAgCGCG--UCCG-GGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 2727 | 0.73 | 0.105741 |
Target: 5'- gCCGgacGCUUgaGCGC-GGCCCGGCGCuGCu -3' miRNA: 3'- aGGUa--CGAG--CGCGuCCGGGUCGCG-CG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 18243 | 0.74 | 0.089412 |
Target: 5'- -aCGUGCUCGCGCucauggacacGCCgaAGCGCGCa -3' miRNA: 3'- agGUACGAGCGCGuc--------CGGg-UCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 34264 | 0.67 | 0.275666 |
Target: 5'- aUCCggGCgcaCGCGCAGGgaCgCAGCGC-Cg -3' miRNA: 3'- -AGGuaCGa--GCGCGUCCg-G-GUCGCGcG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 5732 | 0.67 | 0.275666 |
Target: 5'- --gAUG-UCGCaCAGaucGCCCAGCGCGCc -3' miRNA: 3'- aggUACgAGCGcGUC---CGGGUCGCGCG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 5143 | 0.67 | 0.249247 |
Target: 5'- -aCGUGC-CGCGCAGGCggCCGuCGCuGCu -3' miRNA: 3'- agGUACGaGCGCGUCCG--GGUcGCG-CG- -5' |
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26506 | 5' | -61.7 | NC_005357.1 | + | 26358 | 0.68 | 0.23684 |
Target: 5'- aUCUAcgGCgccgCGCGCGGcGgCCAcGUGCGCg -3' miRNA: 3'- -AGGUa-CGa---GCGCGUC-CgGGU-CGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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