Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26508 | 3' | -54.5 | NC_005357.1 | + | 20439 | 1.09 | 0.000828 |
Target: 5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3' miRNA: 3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 29406 | 0.77 | 0.170521 |
Target: 5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3' miRNA: 3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 30362 | 0.74 | 0.263608 |
Target: 5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3' miRNA: 3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17287 | 0.73 | 0.285095 |
Target: 5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3' miRNA: 3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 19896 | 0.73 | 0.285095 |
Target: 5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3' miRNA: 3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 32024 | 0.73 | 0.295587 |
Target: 5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3' miRNA: 3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 10707 | 0.73 | 0.300174 |
Target: 5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3' miRNA: 3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 35615 | 0.72 | 0.323935 |
Target: 5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3' miRNA: 3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 14852 | 0.72 | 0.332161 |
Target: 5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3' miRNA: 3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 16634 | 0.72 | 0.34054 |
Target: 5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3' miRNA: 3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 9340 | 0.71 | 0.384691 |
Target: 5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3' miRNA: 3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17759 | 0.71 | 0.393964 |
Target: 5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3' miRNA: 3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 36686 | 0.7 | 0.422637 |
Target: 5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3' miRNA: 3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 28750 | 0.7 | 0.43247 |
Target: 5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3' miRNA: 3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 3490 | 0.7 | 0.43247 |
Target: 5'- aACGAcGGCCCGCuguaccagaGCGCaGCGCGAGa- -3' miRNA: 3'- cUGCU-UUGGGCG---------UGCGaCGCGCUUag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17342 | 0.7 | 0.442435 |
Target: 5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3' miRNA: 3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 24631 | 0.7 | 0.451513 |
Target: 5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3' miRNA: 3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 27825 | 0.7 | 0.452528 |
Target: 5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3' miRNA: 3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 22479 | 0.69 | 0.473082 |
Target: 5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3' miRNA: 3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17855 | 0.69 | 0.501552 |
Target: 5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3' miRNA: 3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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