miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26508 3' -54.5 NC_005357.1 + 220 0.67 0.591902
Target:  5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3'
miRNA:   3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5'
26508 3' -54.5 NC_005357.1 + 3490 0.7 0.43247
Target:  5'- aACGAcGGCCCGCuguaccagaGCGCaGCGCGAGa- -3'
miRNA:   3'- cUGCU-UUGGGCG---------UGCGaCGCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 4488 0.68 0.526383
Target:  5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3'
miRNA:   3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 5611 0.67 0.581781
Target:  5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3'
miRNA:   3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 6264 0.66 0.649589
Target:  5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3'
miRNA:   3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 8174 0.66 0.638267
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5'
26508 3' -54.5 NC_005357.1 + 9195 0.66 0.660893
Target:  5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3'
miRNA:   3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 9340 0.71 0.384691
Target:  5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3'
miRNA:   3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 10707 0.73 0.300174
Target:  5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3'
miRNA:   3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5'
26508 3' -54.5 NC_005357.1 + 10807 0.67 0.62694
Target:  5'- -uUGAGGCCCuGcCACGCUGCGUa---- -3'
miRNA:   3'- cuGCUUUGGG-C-GUGCGACGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 12132 0.66 0.69459
Target:  5'- uGGCGcGACgCGCcacGCGCUGCGCu---- -3'
miRNA:   3'- -CUGCuUUGgGCG---UGCGACGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 12193 0.66 0.683406
Target:  5'- aACGAAACCgGCccGCGCUGCcuGCcccuGGUCg -3'
miRNA:   3'- cUGCUUUGGgCG--UGCGACG--CGc---UUAG- -5'
26508 3' -54.5 NC_005357.1 + 12384 0.66 0.67217
Target:  5'- cGGCGAGucgauGCCUGCGCGCuUGUauGCGGc-- -3'
miRNA:   3'- -CUGCUU-----UGGGCGUGCG-ACG--CGCUuag -5'
26508 3' -54.5 NC_005357.1 + 13750 0.66 0.69459
Target:  5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3'
miRNA:   3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 14053 0.66 0.660893
Target:  5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3'
miRNA:   3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5'
26508 3' -54.5 NC_005357.1 + 14073 0.66 0.649589
Target:  5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3'
miRNA:   3'- cugCUUUG---GGCGUGCGACGcGCUuag -5'
26508 3' -54.5 NC_005357.1 + 14626 0.68 0.570579
Target:  5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3'
miRNA:   3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 14852 0.72 0.332161
Target:  5'- uGGCGGccAGCgCCGCACGCUGgGCGc--- -3'
miRNA:   3'- -CUGCU--UUG-GGCGUGCGACgCGCuuag -5'
26508 3' -54.5 NC_005357.1 + 16634 0.72 0.34054
Target:  5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3'
miRNA:   3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 17287 0.73 0.285095
Target:  5'- cACGAAGCCgGCGcCGCggGCGCGcAUCc -3'
miRNA:   3'- cUGCUUUGGgCGU-GCGa-CGCGCuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.