Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26508 | 3' | -54.5 | NC_005357.1 | + | 17342 | 0.7 | 0.442435 |
Target: 5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3' miRNA: 3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17748 | 0.66 | 0.67217 |
Target: 5'- uGGCGAAACCC-CAgGUgUGCaguucgagcaGCGAGUCg -3' miRNA: 3'- -CUGCUUUGGGcGUgCG-ACG----------CGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17759 | 0.71 | 0.393964 |
Target: 5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3' miRNA: 3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 17855 | 0.69 | 0.501552 |
Target: 5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3' miRNA: 3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 19896 | 0.73 | 0.285095 |
Target: 5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3' miRNA: 3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 20439 | 1.09 | 0.000828 |
Target: 5'- cGACGAAACCCGCACGCUGCGCGAAUCc -3' miRNA: 3'- -CUGCUUUGGGCGUGCGACGCGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 21044 | 0.68 | 0.559429 |
Target: 5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3' miRNA: 3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 21425 | 0.66 | 0.649589 |
Target: 5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3' miRNA: 3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 22479 | 0.69 | 0.473082 |
Target: 5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3' miRNA: 3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 24149 | 0.66 | 0.682285 |
Target: 5'- cGCGccuGGCCCaGCGCcucgacgGCUGCGCGcuUCg -3' miRNA: 3'- cUGCu--UUGGG-CGUG-------CGACGCGCuuAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 24631 | 0.7 | 0.451513 |
Target: 5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3' miRNA: 3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 26031 | 0.68 | 0.537323 |
Target: 5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3' miRNA: 3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 26351 | 0.67 | 0.593028 |
Target: 5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3' miRNA: 3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 26429 | 0.66 | 0.683406 |
Target: 5'- cGGCGAccugucCCUGCGCGCgGCGCa---- -3' miRNA: 3'- -CUGCUuu----GGGCGUGCGaCGCGcuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 27665 | 0.66 | 0.67217 |
Target: 5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3' miRNA: 3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 27825 | 0.7 | 0.452528 |
Target: 5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3' miRNA: 3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 28750 | 0.7 | 0.43247 |
Target: 5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3' miRNA: 3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 29406 | 0.77 | 0.170521 |
Target: 5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3' miRNA: 3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 30260 | 0.66 | 0.69459 |
Target: 5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3' miRNA: 3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 30362 | 0.74 | 0.263608 |
Target: 5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3' miRNA: 3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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