miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26508 3' -54.5 NC_005357.1 + 35430 0.67 0.615618
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 8174 0.66 0.638267
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5'
26508 3' -54.5 NC_005357.1 + 17342 0.7 0.442435
Target:  5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3'
miRNA:   3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5'
26508 3' -54.5 NC_005357.1 + 24631 0.7 0.451513
Target:  5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3'
miRNA:   3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5'
26508 3' -54.5 NC_005357.1 + 27825 0.7 0.452528
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26508 3' -54.5 NC_005357.1 + 17855 0.69 0.501552
Target:  5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3'
miRNA:   3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5'
26508 3' -54.5 NC_005357.1 + 4488 0.68 0.526383
Target:  5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3'
miRNA:   3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 21044 0.68 0.559429
Target:  5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3'
miRNA:   3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5'
26508 3' -54.5 NC_005357.1 + 14626 0.68 0.570579
Target:  5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3'
miRNA:   3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 5611 0.67 0.581781
Target:  5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3'
miRNA:   3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 28750 0.7 0.43247
Target:  5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 17759 0.71 0.393964
Target:  5'- gGACGugGCCCGCG-GCggGCGCGAc-- -3'
miRNA:   3'- -CUGCuuUGGGCGUgCGa-CGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 13750 0.66 0.69459
Target:  5'- cGACGugGCgCGcCGCGCUG-GCGAGg- -3'
miRNA:   3'- -CUGCuuUGgGC-GUGCGACgCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 29406 0.77 0.170521
Target:  5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3'
miRNA:   3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 19896 0.73 0.285095
Target:  5'- -cCGgcACgCGCGCGCUGCGCGugcUCg -3'
miRNA:   3'- cuGCuuUGgGCGUGCGACGCGCuu-AG- -5'
26508 3' -54.5 NC_005357.1 + 32024 0.73 0.295587
Target:  5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3'
miRNA:   3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5'
26508 3' -54.5 NC_005357.1 + 10707 0.73 0.300174
Target:  5'- aGGCGugaaaAAGCCCGCGCGCgGCGgGcuGGUCa -3'
miRNA:   3'- -CUGC-----UUUGGGCGUGCGaCGCgC--UUAG- -5'
26508 3' -54.5 NC_005357.1 + 35615 0.72 0.323935
Target:  5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3'
miRNA:   3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 16634 0.72 0.34054
Target:  5'- aACGAuACCgaGCGCGCcGCGCGcAUCg -3'
miRNA:   3'- cUGCUuUGGg-CGUGCGaCGCGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 9340 0.71 0.384691
Target:  5'- gGGCGAGGauguaggccgCCGCGuCGCUGCGCGAc-- -3'
miRNA:   3'- -CUGCUUUg---------GGCGU-GCGACGCGCUuag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.