Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26508 | 3' | -54.5 | NC_005357.1 | + | 4488 | 0.68 | 0.526383 |
Target: 5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3' miRNA: 3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 32286 | 0.68 | 0.526383 |
Target: 5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3' miRNA: 3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 26031 | 0.68 | 0.537323 |
Target: 5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3' miRNA: 3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 21044 | 0.68 | 0.559429 |
Target: 5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3' miRNA: 3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 14626 | 0.68 | 0.570579 |
Target: 5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3' miRNA: 3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 5611 | 0.67 | 0.581781 |
Target: 5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3' miRNA: 3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 220 | 0.67 | 0.591902 |
Target: 5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3' miRNA: 3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 26351 | 0.67 | 0.593028 |
Target: 5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3' miRNA: 3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 33007 | 0.67 | 0.597537 |
Target: 5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3' miRNA: 3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 35430 | 0.67 | 0.615618 |
Target: 5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3' miRNA: 3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 10807 | 0.67 | 0.62694 |
Target: 5'- -uUGAGGCCCuGcCACGCUGCGUa---- -3' miRNA: 3'- cuGCUUUGGG-C-GUGCGACGCGcuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 8174 | 0.66 | 0.638267 |
Target: 5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3' miRNA: 3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 6264 | 0.66 | 0.649589 |
Target: 5'- uGCGGuuGAUCUGCGCGCUGgGCa---- -3' miRNA: 3'- cUGCU--UUGGGCGUGCGACgCGcuuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 21425 | 0.66 | 0.649589 |
Target: 5'- --gGAAGCCgGCACGaugcuuUGCuGUGAAUCg -3' miRNA: 3'- cugCUUUGGgCGUGCg-----ACG-CGCUUAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 14073 | 0.66 | 0.649589 |
Target: 5'- --gGAAACcauCCGCGCGCUGCcCGAc-- -3' miRNA: 3'- cugCUUUG---GGCGUGCGACGcGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 38857 | 0.66 | 0.657505 |
Target: 5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuauUCg -3' miRNA: 3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 9195 | 0.66 | 0.660893 |
Target: 5'- cGACGuuGGCCUGCucgGCgGCGCGGcgCa -3' miRNA: 3'- -CUGCu-UUGGGCGug-CGaCGCGCUuaG- -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 38890 | 0.66 | 0.660893 |
Target: 5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3' miRNA: 3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 35951 | 0.66 | 0.660893 |
Target: 5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3' miRNA: 3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5' |
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26508 | 3' | -54.5 | NC_005357.1 | + | 14053 | 0.66 | 0.660893 |
Target: 5'- cGCGaAAGCCCG-GCGCUGgGCGucGUUg -3' miRNA: 3'- cUGC-UUUGGGCgUGCGACgCGCu-UAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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