miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26508 3' -54.5 NC_005357.1 + 8174 0.66 0.638267
Target:  5'- cGCGugcGCCCGgAUGCUGCcgGCGAuuucAUCg -3'
miRNA:   3'- cUGCuu-UGGGCgUGCGACG--CGCU----UAG- -5'
26508 3' -54.5 NC_005357.1 + 10807 0.67 0.62694
Target:  5'- -uUGAGGCCCuGcCACGCUGCGUa---- -3'
miRNA:   3'- cuGCUUUGGG-C-GUGCGACGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 35430 0.67 0.615618
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 33007 0.67 0.597537
Target:  5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3'
miRNA:   3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 26351 0.67 0.593028
Target:  5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3'
miRNA:   3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 220 0.67 0.591902
Target:  5'- uGGCGuagguAugCCGCAUGUUGUagggccggcgguaGCGAAUCc -3'
miRNA:   3'- -CUGCu----UugGGCGUGCGACG-------------CGCUUAG- -5'
26508 3' -54.5 NC_005357.1 + 5611 0.67 0.581781
Target:  5'- cGGCGggGugcguUUCGCGCGUgGCGCGGcgCa -3'
miRNA:   3'- -CUGCuuU-----GGGCGUGCGaCGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 14626 0.68 0.570579
Target:  5'- cGCGAggacGugCUGCG-GCUGCGCGGcgCg -3'
miRNA:   3'- cUGCU----UugGGCGUgCGACGCGCUuaG- -5'
26508 3' -54.5 NC_005357.1 + 21044 0.68 0.559429
Target:  5'- cGCGcAGGCCCaGCGCGCcauUGCGaCGAAcUCg -3'
miRNA:   3'- cUGC-UUUGGG-CGUGCG---ACGC-GCUU-AG- -5'
26508 3' -54.5 NC_005357.1 + 26031 0.68 0.537323
Target:  5'- cGGCGAuggcaucaaAGCCCGCGCGgCggGCGCGc--- -3'
miRNA:   3'- -CUGCU---------UUGGGCGUGC-Ga-CGCGCuuag -5'
26508 3' -54.5 NC_005357.1 + 32286 0.68 0.526383
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26508 3' -54.5 NC_005357.1 + 4488 0.68 0.526383
Target:  5'- cGACGAAACCgccggaUGCGCGCgGCGCc---- -3'
miRNA:   3'- -CUGCUUUGG------GCGUGCGaCGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 17855 0.69 0.501552
Target:  5'- gGACGGcccgaccguggccGGCCuCGCcaucgccGCGCUGCGCGAccacgcgGUCa -3'
miRNA:   3'- -CUGCU-------------UUGG-GCG-------UGCGACGCGCU-------UAG- -5'
26508 3' -54.5 NC_005357.1 + 22479 0.69 0.473082
Target:  5'- aGGCGGAACCagggGCGgGCUGgGCuGGUCa -3'
miRNA:   3'- -CUGCUUUGGg---CGUgCGACgCGcUUAG- -5'
26508 3' -54.5 NC_005357.1 + 27825 0.7 0.452528
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26508 3' -54.5 NC_005357.1 + 24631 0.7 0.451513
Target:  5'- aGGCGGAAUacugCGCGCGCUucuauccguucgcGCGCGAcUCg -3'
miRNA:   3'- -CUGCUUUGg---GCGUGCGA-------------CGCGCUuAG- -5'
26508 3' -54.5 NC_005357.1 + 17342 0.7 0.442435
Target:  5'- cACGgcGCCgGgCGCGCUGCGCuGggUg -3'
miRNA:   3'- cUGCuuUGGgC-GUGCGACGCG-CuuAg -5'
26508 3' -54.5 NC_005357.1 + 28750 0.7 0.43247
Target:  5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 3490 0.7 0.43247
Target:  5'- aACGAcGGCCCGCuguaccagaGCGCaGCGCGAGa- -3'
miRNA:   3'- cUGCU-UUGGGCG---------UGCGaCGCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 36686 0.7 0.422637
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.