miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26508 3' -54.5 NC_005357.1 + 42192 0.66 0.683406
Target:  5'- cGGgGAAACCCaGCGCGCcaaugccgaggUGCGCcAGUUc -3'
miRNA:   3'- -CUgCUUUGGG-CGUGCG-----------ACGCGcUUAG- -5'
26508 3' -54.5 NC_005357.1 + 38890 0.66 0.660893
Target:  5'- uGGCGGGA-CUGCGCGgUGUGCGGc-- -3'
miRNA:   3'- -CUGCUUUgGGCGUGCgACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 38857 0.66 0.657505
Target:  5'- cGCGGAucgguguacgcccaGCCCGC-UGCUGCGCuauUCg -3'
miRNA:   3'- cUGCUU--------------UGGGCGuGCGACGCGcuuAG- -5'
26508 3' -54.5 NC_005357.1 + 36686 0.7 0.422637
Target:  5'- -uCGcuGCCCgGCGCGCUGgGCG-AUCu -3'
miRNA:   3'- cuGCuuUGGG-CGUGCGACgCGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 35951 0.66 0.660893
Target:  5'- uGCG-GGCCUGCGCGgcgugcaguucCUGCGCGAc-- -3'
miRNA:   3'- cUGCuUUGGGCGUGC-----------GACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 35615 0.72 0.323935
Target:  5'- cGACGAAACCCGCGCcgugucccugGCUGaccagGCG-GUCa -3'
miRNA:   3'- -CUGCUUUGGGCGUG----------CGACg----CGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 35430 0.67 0.615618
Target:  5'- cGCGAgccGACCCGCucGCGC-GUGUGAAa- -3'
miRNA:   3'- cUGCU---UUGGGCG--UGCGaCGCGCUUag -5'
26508 3' -54.5 NC_005357.1 + 33007 0.67 0.597537
Target:  5'- cGACGcuauucaagaccugcAAGCCCGCgGC-CUGCGCGAc-- -3'
miRNA:   3'- -CUGC---------------UUUGGGCG-UGcGACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 32778 0.66 0.69459
Target:  5'- cGGCGAAguccGCCCucgGCACcucgcugguGCUGCGCGucugccGGUCg -3'
miRNA:   3'- -CUGCUU----UGGG---CGUG---------CGACGCGC------UUAG- -5'
26508 3' -54.5 NC_005357.1 + 32286 0.68 0.526383
Target:  5'- --gGAAAacaCCaGCGCGUUGCGCGAccucAUCg -3'
miRNA:   3'- cugCUUUg--GG-CGUGCGACGCGCU----UAG- -5'
26508 3' -54.5 NC_005357.1 + 32024 0.73 0.295587
Target:  5'- uGGCGAGGCCaucgGCGCGCUGCaucacccggacaucgGCGAcAUCg -3'
miRNA:   3'- -CUGCUUUGGg---CGUGCGACG---------------CGCU-UAG- -5'
26508 3' -54.5 NC_005357.1 + 31736 0.66 0.67217
Target:  5'- -cCGAGGCCgUGCGCGCUGC-CG--UCa -3'
miRNA:   3'- cuGCUUUGG-GCGUGCGACGcGCuuAG- -5'
26508 3' -54.5 NC_005357.1 + 30362 0.74 0.263608
Target:  5'- cGCGAGaACCCGC-CGCUGCuguaggGUGggUCg -3'
miRNA:   3'- cUGCUU-UGGGCGuGCGACG------CGCuuAG- -5'
26508 3' -54.5 NC_005357.1 + 30260 0.66 0.69459
Target:  5'- --aGAuAGCUgCGCugGUcGCGCGAGUCg -3'
miRNA:   3'- cugCU-UUGG-GCGugCGaCGCGCUUAG- -5'
26508 3' -54.5 NC_005357.1 + 29406 0.77 0.170521
Target:  5'- uGACGAGGCCguCGCcacuGCGCUGCGCGGc-- -3'
miRNA:   3'- -CUGCUUUGG--GCG----UGCGACGCGCUuag -5'
26508 3' -54.5 NC_005357.1 + 28750 0.7 0.43247
Target:  5'- cGACGAcAUCCuCACGgUGCGCG-GUCa -3'
miRNA:   3'- -CUGCUuUGGGcGUGCgACGCGCuUAG- -5'
26508 3' -54.5 NC_005357.1 + 27825 0.7 0.452528
Target:  5'- --gGAAGCCgaCGCACuGCUGaaaaGCGGAUCg -3'
miRNA:   3'- cugCUUUGG--GCGUG-CGACg---CGCUUAG- -5'
26508 3' -54.5 NC_005357.1 + 27665 0.66 0.67217
Target:  5'- --aGAucGACaCCGaCACGCUGCGCGc--- -3'
miRNA:   3'- cugCU--UUG-GGC-GUGCGACGCGCuuag -5'
26508 3' -54.5 NC_005357.1 + 26429 0.66 0.683406
Target:  5'- cGGCGAccugucCCUGCGCGCgGCGCa---- -3'
miRNA:   3'- -CUGCUuu----GGGCGUGCGaCGCGcuuag -5'
26508 3' -54.5 NC_005357.1 + 26351 0.67 0.593028
Target:  5'- cACGAccaucuacGGCgCCGCGCGCggcggccacgUGCGCGAAc- -3'
miRNA:   3'- cUGCU--------UUG-GGCGUGCG----------ACGCGCUUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.