miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26509 5' -59.5 NC_005357.1 + 11945 0.66 0.474476
Target:  5'- uCGaCGACUUucAGCAGGUgacGCGAUGACCGc -3'
miRNA:   3'- -GC-GCUGGGc-UCGUUCG---CGCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 33793 0.66 0.473487
Target:  5'- gCGCGGCCUgGGGCGuuuccgaAGgGCGuacCGGCCa -3'
miRNA:   3'- -GCGCUGGG-CUCGU-------UCgCGCu--GCUGGc -5'
26509 5' -59.5 NC_005357.1 + 7352 0.66 0.473487
Target:  5'- gCGCGGCCucgaccucggcguCGuucguccagcGGCGGGCaccGCGGCGACCu -3'
miRNA:   3'- -GCGCUGG-------------GC----------UCGUUCG---CGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 41251 0.66 0.471511
Target:  5'- gGcCGACCCcGGCGgcgagacuauguggGGCGUGACcGCCGc -3'
miRNA:   3'- gC-GCUGGGcUCGU--------------UCGCGCUGcUGGC- -5'
26509 5' -59.5 NC_005357.1 + 42233 0.66 0.46463
Target:  5'- cCGUGucGCCCG-GC-AGCGUGACGguGCCc -3'
miRNA:   3'- -GCGC--UGGGCuCGuUCGCGCUGC--UGGc -5'
26509 5' -59.5 NC_005357.1 + 40193 0.66 0.46463
Target:  5'- gCGCGGCCaCGcGCcgccugcuGCGCGugGugCu -3'
miRNA:   3'- -GCGCUGG-GCuCGuu------CGCGCugCugGc -5'
26509 5' -59.5 NC_005357.1 + 4875 0.66 0.46463
Target:  5'- uCGUuGCCC-AGCGcGGCGaCGGCGGCCu -3'
miRNA:   3'- -GCGcUGGGcUCGU-UCGC-GCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 34739 0.66 0.46463
Target:  5'- aGcCGGCcgCCGAGguCAAGCcCGACGACCu -3'
miRNA:   3'- gC-GCUG--GGCUC--GUUCGcGCUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 34186 0.66 0.46463
Target:  5'- gGCcGCuuGAagcGCAAGCuGCuGACGGCCGc -3'
miRNA:   3'- gCGcUGggCU---CGUUCG-CG-CUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 23569 0.66 0.46463
Target:  5'- uCGcCGGCaggugCGGGCGgggGGCGaCGAUGGCCGu -3'
miRNA:   3'- -GC-GCUGg----GCUCGU---UCGC-GCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 3517 0.66 0.46463
Target:  5'- gCGCGAgaaCCCGAGa----GCGACGuGCCGu -3'
miRNA:   3'- -GCGCU---GGGCUCguucgCGCUGC-UGGC- -5'
26509 5' -59.5 NC_005357.1 + 37048 0.66 0.463651
Target:  5'- gCGCGcaccagugacauaACCCuGGGCGcGGUGCaGGCGGCCa -3'
miRNA:   3'- -GCGC-------------UGGG-CUCGU-UCGCG-CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 29522 0.66 0.454892
Target:  5'- gCGCGG-CCGAGCGcaucgccaaAG-GCGACGACa- -3'
miRNA:   3'- -GCGCUgGGCUCGU---------UCgCGCUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 19874 0.66 0.454892
Target:  5'- gGCGugCCGAagGCGucGCGCGccuucuUGGCCGu -3'
miRNA:   3'- gCGCugGGCU--CGUu-CGCGCu-----GCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 726 0.66 0.454892
Target:  5'- -aCGGCCaaguCGAGCGccuGGCG-GAUGACCGa -3'
miRNA:   3'- gcGCUGG----GCUCGU---UCGCgCUGCUGGC- -5'
26509 5' -59.5 NC_005357.1 + 16162 0.66 0.454892
Target:  5'- gCGCGAgCCGAcCAGGC-CGGCGGgugcCCGu -3'
miRNA:   3'- -GCGCUgGGCUcGUUCGcGCUGCU----GGC- -5'
26509 5' -59.5 NC_005357.1 + 2910 0.66 0.445264
Target:  5'- gCGCGcCCCGAuGUucGCGUucgaguucGACGGCCc -3'
miRNA:   3'- -GCGCuGGGCU-CGuuCGCG--------CUGCUGGc -5'
26509 5' -59.5 NC_005357.1 + 41619 0.66 0.445264
Target:  5'- -uCGGCaaGGGCuGGGCGCGGCGcgucGCCGg -3'
miRNA:   3'- gcGCUGggCUCG-UUCGCGCUGC----UGGC- -5'
26509 5' -59.5 NC_005357.1 + 16479 0.66 0.445264
Target:  5'- aCGaCGGCUacaaGGuCAAGCGCGGCGACa- -3'
miRNA:   3'- -GC-GCUGGg---CUcGUUCGCGCUGCUGgc -5'
26509 5' -59.5 NC_005357.1 + 29246 0.66 0.444308
Target:  5'- aCGcCGGCCaaGGGCGcccAGCGCGGCcgacacuGGCCGa -3'
miRNA:   3'- -GC-GCUGGg-CUCGU---UCGCGCUG-------CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.