miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 32544 0.72 0.43584
Target:  5'- gAGAgGCCCgaACCGCCCgCGgggauggcuucUCCGCCg -3'
miRNA:   3'- gUUUgUGGGg-UGGCGGGgGU-----------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 28571 0.71 0.444617
Target:  5'- aGAACGCCCC-UgGCCCCCGg--GCCa -3'
miRNA:   3'- gUUUGUGGGGuGgCGGGGGUaggCGG- -5'
2651 5' -59.8 NC_001491.2 + 117627 0.71 0.471528
Target:  5'- uCAAGCACCCCACCcggGCgCa-AUCCGCa -3'
miRNA:   3'- -GUUUGUGGGGUGG---CGgGggUAGGCGg -5'
2651 5' -59.8 NC_001491.2 + 34082 0.71 0.489919
Target:  5'- gGAGCcuucagACCCUGCCGCCCCUGUggcccaCCGUCc -3'
miRNA:   3'- gUUUG------UGGGGUGGCGGGGGUA------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 147471 0.7 0.49924
Target:  5'- gCAuACGCCCCcauaccCCGCCCCC--UCGCUc -3'
miRNA:   3'- -GUuUGUGGGGu-----GGCGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 107172 0.7 0.49924
Target:  5'- gAGGCuAUCUUugcgGCCGCCgCCCGUCCGCUu -3'
miRNA:   3'- gUUUG-UGGGG----UGGCGG-GGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 111067 0.7 0.508638
Target:  5'- --cGCugCCCA-CGCCCCCAgagcauuaUCCGUg -3'
miRNA:   3'- guuUGugGGGUgGCGGGGGU--------AGGCGg -5'
2651 5' -59.8 NC_001491.2 + 118268 0.7 0.508638
Target:  5'- gCGGACGCgCCagaGCCGCaCCCAaacgCCGCCc -3'
miRNA:   3'- -GUUUGUG-GGg--UGGCGgGGGUa---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 109248 0.7 0.527651
Target:  5'- gCGAAC-CCCCACUGCUUgaagcaCGUCUGCCc -3'
miRNA:   3'- -GUUUGuGGGGUGGCGGGg-----GUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 27104 0.7 0.527651
Target:  5'- gCGGGCGgCCCggcGCCGCUCCggagcgCGUCCGCUg -3'
miRNA:   3'- -GUUUGUgGGG---UGGCGGGG------GUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 75968 0.7 0.537258
Target:  5'- uCAAGCAgcagcccucgcUCCCGCCGCgCCg--CCGCCg -3'
miRNA:   3'- -GUUUGU-----------GGGGUGGCGgGGguaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 24726 0.7 0.541117
Target:  5'- -cGACGCCgCC-CCGCCCCgGggacccgcgggcgcCCGCCg -3'
miRNA:   3'- guUUGUGG-GGuGGCGGGGgUa-------------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76152 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 80182 0.69 0.556644
Target:  5'- -cGGCGCCCCGCUGgcgcuccgucgagcuUCCCCGgaagguacgcgagCCGCCa -3'
miRNA:   3'- guUUGUGGGGUGGC---------------GGGGGUa------------GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76216 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76184 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76056 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76120 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76024 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 76088 0.69 0.556644
Target:  5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3'
miRNA:   3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.