Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2651 | 5' | -59.8 | NC_001491.2 | + | 32544 | 0.72 | 0.43584 |
Target: 5'- gAGAgGCCCgaACCGCCCgCGgggauggcuucUCCGCCg -3' miRNA: 3'- gUUUgUGGGg-UGGCGGGgGU-----------AGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 28571 | 0.71 | 0.444617 |
Target: 5'- aGAACGCCCC-UgGCCCCCGg--GCCa -3' miRNA: 3'- gUUUGUGGGGuGgCGGGGGUaggCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 117627 | 0.71 | 0.471528 |
Target: 5'- uCAAGCACCCCACCcggGCgCa-AUCCGCa -3' miRNA: 3'- -GUUUGUGGGGUGG---CGgGggUAGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 34082 | 0.71 | 0.489919 |
Target: 5'- gGAGCcuucagACCCUGCCGCCCCUGUggcccaCCGUCc -3' miRNA: 3'- gUUUG------UGGGGUGGCGGGGGUA------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 147471 | 0.7 | 0.49924 |
Target: 5'- gCAuACGCCCCcauaccCCGCCCCC--UCGCUc -3' miRNA: 3'- -GUuUGUGGGGu-----GGCGGGGGuaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 107172 | 0.7 | 0.49924 |
Target: 5'- gAGGCuAUCUUugcgGCCGCCgCCCGUCCGCUu -3' miRNA: 3'- gUUUG-UGGGG----UGGCGG-GGGUAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 111067 | 0.7 | 0.508638 |
Target: 5'- --cGCugCCCA-CGCCCCCAgagcauuaUCCGUg -3' miRNA: 3'- guuUGugGGGUgGCGGGGGU--------AGGCGg -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 118268 | 0.7 | 0.508638 |
Target: 5'- gCGGACGCgCCagaGCCGCaCCCAaacgCCGCCc -3' miRNA: 3'- -GUUUGUG-GGg--UGGCGgGGGUa---GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 109248 | 0.7 | 0.527651 |
Target: 5'- gCGAAC-CCCCACUGCUUgaagcaCGUCUGCCc -3' miRNA: 3'- -GUUUGuGGGGUGGCGGGg-----GUAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 27104 | 0.7 | 0.527651 |
Target: 5'- gCGGGCGgCCCggcGCCGCUCCggagcgCGUCCGCUg -3' miRNA: 3'- -GUUUGUgGGG---UGGCGGGG------GUAGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 75968 | 0.7 | 0.537258 |
Target: 5'- uCAAGCAgcagcccucgcUCCCGCCGCgCCg--CCGCCg -3' miRNA: 3'- -GUUUGU-----------GGGGUGGCGgGGguaGGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 24726 | 0.7 | 0.541117 |
Target: 5'- -cGACGCCgCC-CCGCCCCgGggacccgcgggcgcCCGCCg -3' miRNA: 3'- guUUGUGG-GGuGGCGGGGgUa-------------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76152 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 80182 | 0.69 | 0.556644 |
Target: 5'- -cGGCGCCCCGCUGgcgcuccgucgagcuUCCCCGgaagguacgcgagCCGCCa -3' miRNA: 3'- guUUGUGGGGUGGC---------------GGGGGUa------------GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76216 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76184 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76056 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76120 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76024 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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2651 | 5' | -59.8 | NC_001491.2 | + | 76088 | 0.69 | 0.556644 |
Target: 5'- --cGCGCCgCCGCCgcagcaGCCCUCGcucCCGCCg -3' miRNA: 3'- guuUGUGG-GGUGG------CGGGGGUa--GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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