miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2651 5' -59.8 NC_001491.2 + 147471 0.7 0.49924
Target:  5'- gCAuACGCCCCcauaccCCGCCCCC--UCGCUc -3'
miRNA:   3'- -GUuUGUGGGGu-----GGCGGGGGuaGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 146225 0.68 0.634677
Target:  5'- -uAGCGCCCCguuuagcGCCGCCaCCCAguacgaCUGCg -3'
miRNA:   3'- guUUGUGGGG-------UGGCGG-GGGUa-----GGCGg -5'
2651 5' -59.8 NC_001491.2 + 146078 0.66 0.761823
Target:  5'- gCAAACGCgCCUACaCGCCUuuuUCAUCgGCg -3'
miRNA:   3'- -GUUUGUG-GGGUG-GCGGG---GGUAGgCGg -5'
2651 5' -59.8 NC_001491.2 + 138847 0.66 0.733668
Target:  5'- aAGGCGCCCCAaaGCCCCguaCUGUg -3'
miRNA:   3'- gUUUGUGGGGUggCGGGGguaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 128200 0.66 0.780066
Target:  5'- gGAACACCCUcuguguuuGuuGCCCCaaccguGUCCGUUu -3'
miRNA:   3'- gUUUGUGGGG--------UggCGGGGg-----UAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 126837 0.66 0.780066
Target:  5'- gCAucCACUCCACgGCCCacgCUGUCUGCa -3'
miRNA:   3'- -GUuuGUGGGGUGgCGGG---GGUAGGCGg -5'
2651 5' -59.8 NC_001491.2 + 124553 0.69 0.576227
Target:  5'- ---uCACuCCCAUCGCCCCUAgccucaagaaCGCCu -3'
miRNA:   3'- guuuGUG-GGGUGGCGGGGGUag--------GCGG- -5'
2651 5' -59.8 NC_001491.2 + 120210 0.73 0.385368
Target:  5'- cCAAAUGCCUCGCCauaCCCCCG-CCGCa -3'
miRNA:   3'- -GUUUGUGGGGUGGc--GGGGGUaGGCGg -5'
2651 5' -59.8 NC_001491.2 + 118268 0.7 0.508638
Target:  5'- gCGGACGCgCCagaGCCGCaCCCAaacgCCGCCc -3'
miRNA:   3'- -GUUUGUG-GGg--UGGCGgGGGUa---GGCGG- -5'
2651 5' -59.8 NC_001491.2 + 117627 0.71 0.471528
Target:  5'- uCAAGCACCCCACCcggGCgCa-AUCCGCa -3'
miRNA:   3'- -GUUUGUGGGGUGG---CGgGggUAGGCGg -5'
2651 5' -59.8 NC_001491.2 + 116486 0.75 0.277121
Target:  5'- aCAAACAUcuggUCCACCGCCUCCAuuucccugUCCGUCc -3'
miRNA:   3'- -GUUUGUG----GGGUGGCGGGGGU--------AGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 113481 0.76 0.25862
Target:  5'- uGAGCGCCCC-CCG-CCUUAUUCGCCg -3'
miRNA:   3'- gUUUGUGGGGuGGCgGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 111067 0.7 0.508638
Target:  5'- --cGCugCCCA-CGCCCCCAgagcauuaUCCGUg -3'
miRNA:   3'- guuUGugGGGUgGCGGGGGU--------AGGCGg -5'
2651 5' -59.8 NC_001491.2 + 109248 0.7 0.527651
Target:  5'- gCGAAC-CCCCACUGCUUgaagcaCGUCUGCCc -3'
miRNA:   3'- -GUUUGuGGGGUGGCGGGg-----GUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 107172 0.7 0.49924
Target:  5'- gAGGCuAUCUUugcgGCCGCCgCCCGUCCGCUu -3'
miRNA:   3'- gUUUG-UGGGG----UGGCGG-GGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 102183 0.69 0.595959
Target:  5'- --cGCACCCCccaaCGCCCCCAuggcuucaaUCaCGUCu -3'
miRNA:   3'- guuUGUGGGGug--GCGGGGGU---------AG-GCGG- -5'
2651 5' -59.8 NC_001491.2 + 100554 1.11 0.000921
Target:  5'- cCAAACACCCCACCGCCCCCAUCCGCCg -3'
miRNA:   3'- -GUUUGUGGGGUGGCGGGGGUAGGCGG- -5'
2651 5' -59.8 NC_001491.2 + 99872 0.76 0.246854
Target:  5'- uGGGCAggUCCCGCCGCCaCCCAcgCCGCa -3'
miRNA:   3'- gUUUGU--GGGGUGGCGG-GGGUa-GGCGg -5'
2651 5' -59.8 NC_001491.2 + 99381 0.66 0.733668
Target:  5'- uGAACGCCCCgagugcugacACgGCUCCUA-CgGCCa -3'
miRNA:   3'- gUUUGUGGGG----------UGgCGGGGGUaGgCGG- -5'
2651 5' -59.8 NC_001491.2 + 98926 0.68 0.61182
Target:  5'- gCAAGCGCUCCGCCugaacGCCCUCugaggcggcaaCGCCg -3'
miRNA:   3'- -GUUUGUGGGGUGG-----CGGGGGuag--------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.