miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26511 3' -53 NC_005357.1 + 19731 1.14 0.000513
Target:  5'- aGCGCAAACUGCUGCUUUCGCGCUGGGg -3'
miRNA:   3'- -CGCGUUUGACGACGAAAGCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 36679 0.78 0.186862
Target:  5'- gGCGC--ACUcGCUGCccggCGCGCUGGGc -3'
miRNA:   3'- -CGCGuuUGA-CGACGaaa-GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 21187 0.74 0.319661
Target:  5'- uGCGCGGcCUGCUGCUggucugCGCGUUGc- -3'
miRNA:   3'- -CGCGUUuGACGACGAaa----GCGCGACcc -5'
26511 3' -53 NC_005357.1 + 36245 0.71 0.449547
Target:  5'- cUGCAAAC-GCUGCggcaagaccggccUGCGCUGGGa -3'
miRNA:   3'- cGCGUUUGaCGACGaaa----------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 42021 0.71 0.458791
Target:  5'- cCGCGAcgUGCUGCUcaacagucgCGCGCUGGc -3'
miRNA:   3'- cGCGUUugACGACGAaa-------GCGCGACCc -5'
26511 3' -53 NC_005357.1 + 35217 0.71 0.479689
Target:  5'- gGCGCAGA-UGCUGCcguggacaUCGCGCUGu- -3'
miRNA:   3'- -CGCGUUUgACGACGaa------AGCGCGACcc -5'
26511 3' -53 NC_005357.1 + 36460 0.7 0.490311
Target:  5'- gGUGUu-GCUGuUUGCUUaCGCGCUGGa -3'
miRNA:   3'- -CGCGuuUGAC-GACGAAaGCGCGACCc -5'
26511 3' -53 NC_005357.1 + 19808 0.7 0.501041
Target:  5'- -aGCGAcuacCUGCUGCcg-CGCGCgGGGc -3'
miRNA:   3'- cgCGUUu---GACGACGaaaGCGCGaCCC- -5'
26511 3' -53 NC_005357.1 + 28251 0.7 0.505362
Target:  5'- uGCGcCAGGCucaccaUGUUGCgcaccaugaccgCGCGCUGGGa -3'
miRNA:   3'- -CGC-GUUUG------ACGACGaaa---------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 28657 0.7 0.511874
Target:  5'- cGCGCAcaaGAUUGC-GCUcaugUCgGCGCUGGa -3'
miRNA:   3'- -CGCGU---UUGACGaCGAa---AG-CGCGACCc -5'
26511 3' -53 NC_005357.1 + 25253 0.7 0.511874
Target:  5'- aGCGCAc-CUGUUGC--UCGCGCUGc- -3'
miRNA:   3'- -CGCGUuuGACGACGaaAGCGCGACcc -5'
26511 3' -53 NC_005357.1 + 39851 0.7 0.511874
Target:  5'- gGCgGCAAGC-GC-GCgcaCGCGCUGGGc -3'
miRNA:   3'- -CG-CGUUUGaCGaCGaaaGCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 19902 0.7 0.544917
Target:  5'- cGCGCGcGCUGC-GCgugcUCGCuGCgGGGa -3'
miRNA:   3'- -CGCGUuUGACGaCGaa--AGCG-CGaCCC- -5'
26511 3' -53 NC_005357.1 + 218 0.69 0.556088
Target:  5'- -gGCGAACUgGCgcaccucgGCauuggCGCGCUGGGu -3'
miRNA:   3'- cgCGUUUGA-CGa-------CGaaa--GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 32618 0.69 0.557209
Target:  5'- uGCGCAAAC-GCUGCUUgacugguucggcgugCGCGacCUGGc -3'
miRNA:   3'- -CGCGUUUGaCGACGAAa--------------GCGC--GACCc -5'
26511 3' -53 NC_005357.1 + 18042 0.69 0.575226
Target:  5'- -gGCGGGCUGCUugggggccuuaccgGCgcggggugCGUGCUGGGc -3'
miRNA:   3'- cgCGUUUGACGA--------------CGaaa-----GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 18822 0.68 0.624176
Target:  5'- gGCGCAGGaaGCUGCgaauUUUGCGC-GGc -3'
miRNA:   3'- -CGCGUUUgaCGACGa---AAGCGCGaCCc -5'
26511 3' -53 NC_005357.1 + 7905 0.68 0.63561
Target:  5'- uGCGUAGAUcgccaGCUGCUcgUUGCGCUcGGc -3'
miRNA:   3'- -CGCGUUUGa----CGACGAa-AGCGCGAcCC- -5'
26511 3' -53 NC_005357.1 + 2282 0.68 0.64704
Target:  5'- cGCGUAcAgUGCcGCgcggUCGaUGCUGGGg -3'
miRNA:   3'- -CGCGUuUgACGaCGaa--AGC-GCGACCC- -5'
26511 3' -53 NC_005357.1 + 12626 0.68 0.658456
Target:  5'- cGCGCucggcaucGCUGCUGCcguccUUUgGCGUcGGGu -3'
miRNA:   3'- -CGCGuu------UGACGACG-----AAAgCGCGaCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.