Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26511 | 3' | -53 | NC_005357.1 | + | 218 | 0.69 | 0.556088 |
Target: 5'- -gGCGAACUgGCgcaccucgGCauuggCGCGCUGGGu -3' miRNA: 3'- cgCGUUUGA-CGa-------CGaaa--GCGCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 2282 | 0.68 | 0.64704 |
Target: 5'- cGCGUAcAgUGCcGCgcggUCGaUGCUGGGg -3' miRNA: 3'- -CGCGUuUgACGaCGaa--AGC-GCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 4382 | 0.66 | 0.75854 |
Target: 5'- uGCGCAGcCagGC-GCcgUCGCGCcGGGc -3' miRNA: 3'- -CGCGUUuGa-CGaCGaaAGCGCGaCCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 5149 | 0.66 | 0.779575 |
Target: 5'- cGCGCAGGCggccgucGCUGCUcaCGCccuugGCgaGGGu -3' miRNA: 3'- -CGCGUUUGa------CGACGAaaGCG-----CGa-CCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 6254 | 0.66 | 0.779575 |
Target: 5'- cCGguAACggUGCgGUUgaucugCGCGCUGGGc -3' miRNA: 3'- cGCguUUG--ACGaCGAaa----GCGCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 7001 | 0.67 | 0.669846 |
Target: 5'- cGCGCGAGCggGUcgGC--UCGCGUgaUGGGc -3' miRNA: 3'- -CGCGUUUGa-CGa-CGaaAGCGCG--ACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 7905 | 0.68 | 0.63561 |
Target: 5'- uGCGUAGAUcgccaGCUGCUcgUUGCGCUcGGc -3' miRNA: 3'- -CGCGUUUGa----CGACGAa-AGCGCGAcCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 11262 | 0.67 | 0.714899 |
Target: 5'- aGgGUuuGC-GCUGCg---GCGCUGGGa -3' miRNA: 3'- -CgCGuuUGaCGACGaaagCGCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 12626 | 0.68 | 0.658456 |
Target: 5'- cGCGCucggcaucGCUGCUGCcguccUUUgGCGUcGGGu -3' miRNA: 3'- -CGCGuu------UGACGACG-----AAAgCGCGaCCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 14427 | 0.66 | 0.769133 |
Target: 5'- gGCGCGc-CUGCgGCac-CGUGUUGGGc -3' miRNA: 3'- -CGCGUuuGACGaCGaaaGCGCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 14624 | 0.66 | 0.779575 |
Target: 5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3' miRNA: 3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 14725 | 0.66 | 0.75854 |
Target: 5'- gGCgGCGAGCcGCUGCcggCGCGC-GGc -3' miRNA: 3'- -CG-CGUUUGaCGACGaaaGCGCGaCCc -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 14957 | 0.66 | 0.769133 |
Target: 5'- uCGCGuGgUGCgugGCgg-CGCGCUGGc -3' miRNA: 3'- cGCGUuUgACGa--CGaaaGCGCGACCc -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 18042 | 0.69 | 0.575226 |
Target: 5'- -gGCGGGCUGCUugggggccuuaccgGCgcggggugCGUGCUGGGc -3' miRNA: 3'- cgCGUUUGACGA--------------CGaaa-----GCGCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 18822 | 0.68 | 0.624176 |
Target: 5'- gGCGCAGGaaGCUGCgaauUUUGCGC-GGc -3' miRNA: 3'- -CGCGUUUgaCGACGa---AAGCGCGaCCc -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 19242 | 0.67 | 0.714899 |
Target: 5'- gGC-CGAcCUGCUGCUgUCGCaccaGCaGGGg -3' miRNA: 3'- -CGcGUUuGACGACGAaAGCG----CGaCCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 19731 | 1.14 | 0.000513 |
Target: 5'- aGCGCAAACUGCUGCUUUCGCGCUGGGg -3' miRNA: 3'- -CGCGUUUGACGACGAAAGCGCGACCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 19808 | 0.7 | 0.501041 |
Target: 5'- -aGCGAcuacCUGCUGCcg-CGCGCgGGGc -3' miRNA: 3'- cgCGUUu---GACGACGaaaGCGCGaCCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 19902 | 0.7 | 0.544917 |
Target: 5'- cGCGCGcGCUGC-GCgugcUCGCuGCgGGGa -3' miRNA: 3'- -CGCGUuUGACGaCGaa--AGCG-CGaCCC- -5' |
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26511 | 3' | -53 | NC_005357.1 | + | 20298 | 0.67 | 0.669846 |
Target: 5'- cGUGCAAAgcCUGUUcgaccGCgg-CGCGCUGGa -3' miRNA: 3'- -CGCGUUU--GACGA-----CGaaaGCGCGACCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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