miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26511 3' -53 NC_005357.1 + 36679 0.78 0.186862
Target:  5'- gGCGC--ACUcGCUGCccggCGCGCUGGGc -3'
miRNA:   3'- -CGCGuuUGA-CGACGaaa-GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 2282 0.68 0.64704
Target:  5'- cGCGUAcAgUGCcGCgcggUCGaUGCUGGGg -3'
miRNA:   3'- -CGCGUuUgACGaCGaa--AGC-GCGACCC- -5'
26511 3' -53 NC_005357.1 + 12626 0.68 0.658456
Target:  5'- cGCGCucggcaucGCUGCUGCcguccUUUgGCGUcGGGu -3'
miRNA:   3'- -CGCGuu------UGACGACG-----AAAgCGCGaCCC- -5'
26511 3' -53 NC_005357.1 + 23012 0.67 0.692498
Target:  5'- -gGCcuGCUGCUGCgccUGCuGUUGGGc -3'
miRNA:   3'- cgCGuuUGACGACGaaaGCG-CGACCC- -5'
26511 3' -53 NC_005357.1 + 22855 0.67 0.692498
Target:  5'- aGCGCGcGCUGCgaauuggGCUgcuucuggUUCGCGC-GGu -3'
miRNA:   3'- -CGCGUuUGACGa------CGA--------AAGCGCGaCCc -5'
26511 3' -53 NC_005357.1 + 11262 0.67 0.714899
Target:  5'- aGgGUuuGC-GCUGCg---GCGCUGGGa -3'
miRNA:   3'- -CgCGuuUGaCGACGaaagCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 31005 0.66 0.755334
Target:  5'- cGCGCGAcCUGUccacggGCUUgccggccgaggcaaUCGCGC-GGGc -3'
miRNA:   3'- -CGCGUUuGACGa-----CGAA--------------AGCGCGaCCC- -5'
26511 3' -53 NC_005357.1 + 14427 0.66 0.769133
Target:  5'- gGCGCGc-CUGCgGCac-CGUGUUGGGc -3'
miRNA:   3'- -CGCGUuuGACGaCGaaaGCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 6254 0.66 0.779575
Target:  5'- cCGguAACggUGCgGUUgaucugCGCGCUGGGc -3'
miRNA:   3'- cGCguUUG--ACGaCGAaa----GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 18822 0.68 0.624176
Target:  5'- gGCGCAGGaaGCUGCgaauUUUGCGC-GGc -3'
miRNA:   3'- -CGCGUUUgaCGACGa---AAGCGCGaCCc -5'
26511 3' -53 NC_005357.1 + 18042 0.69 0.575226
Target:  5'- -gGCGGGCUGCUugggggccuuaccgGCgcggggugCGUGCUGGGc -3'
miRNA:   3'- cgCGUUUGACGA--------------CGaaa-----GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 21187 0.74 0.319661
Target:  5'- uGCGCGGcCUGCUGCUggucugCGCGUUGc- -3'
miRNA:   3'- -CGCGUUuGACGACGAaa----GCGCGACcc -5'
26511 3' -53 NC_005357.1 + 36245 0.71 0.449547
Target:  5'- cUGCAAAC-GCUGCggcaagaccggccUGCGCUGGGa -3'
miRNA:   3'- cGCGUUUGaCGACGaaa----------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 42021 0.71 0.458791
Target:  5'- cCGCGAcgUGCUGCUcaacagucgCGCGCUGGc -3'
miRNA:   3'- cGCGUUugACGACGAaa-------GCGCGACCc -5'
26511 3' -53 NC_005357.1 + 36460 0.7 0.490311
Target:  5'- gGUGUu-GCUGuUUGCUUaCGCGCUGGa -3'
miRNA:   3'- -CGCGuuUGAC-GACGAAaGCGCGACCc -5'
26511 3' -53 NC_005357.1 + 28251 0.7 0.505362
Target:  5'- uGCGcCAGGCucaccaUGUUGCgcaccaugaccgCGCGCUGGGa -3'
miRNA:   3'- -CGC-GUUUG------ACGACGaaa---------GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 25253 0.7 0.511874
Target:  5'- aGCGCAc-CUGUUGC--UCGCGCUGc- -3'
miRNA:   3'- -CGCGUuuGACGACGaaAGCGCGACcc -5'
26511 3' -53 NC_005357.1 + 39851 0.7 0.511874
Target:  5'- gGCgGCAAGC-GC-GCgcaCGCGCUGGGc -3'
miRNA:   3'- -CG-CGUUUGaCGaCGaaaGCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 218 0.69 0.556088
Target:  5'- -gGCGAACUgGCgcaccucgGCauuggCGCGCUGGGu -3'
miRNA:   3'- cgCGUUUGA-CGa-------CGaaa--GCGCGACCC- -5'
26511 3' -53 NC_005357.1 + 14624 0.66 0.779575
Target:  5'- cGCGCGAggacguGCUGCgGCUgcgcggCGCGCg--- -3'
miRNA:   3'- -CGCGUU------UGACGaCGAaa----GCGCGaccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.