miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2652 5' -64.7 NC_001491.2 + 148418 0.74 0.1835
Target:  5'- gGGGC-GGUCaucaCGCuCGCCGUCCACGCc -3'
miRNA:   3'- aCCCGuCCAGg---GCG-GCGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 147716 0.66 0.52016
Target:  5'- -uGGCAGGguccggCCCGCgucaGCC-CCUACGg -3'
miRNA:   3'- acCCGUCCa-----GGGCGg---CGGuGGGUGCg -5'
2652 5' -64.7 NC_001491.2 + 144489 0.66 0.510938
Target:  5'- gGGcGCAGaaaCCGCCGUCgACCCuucagGCGCa -3'
miRNA:   3'- aCC-CGUCcagGGCGGCGG-UGGG-----UGCG- -5'
2652 5' -64.7 NC_001491.2 + 141754 0.68 0.382665
Target:  5'- aGaGGCGGGUUCCGCUGggcaugcuUCACCUcgcaauGCGCg -3'
miRNA:   3'- aC-CCGUCCAGGGCGGC--------GGUGGG------UGCG- -5'
2652 5' -64.7 NC_001491.2 + 136040 0.71 0.26614
Target:  5'- aGGGCGGGaaccucugggaagggCUCGUCGCCAUgCGCGUu -3'
miRNA:   3'- aCCCGUCCa--------------GGGCGGCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 105268 0.66 0.519234
Target:  5'- cGGGCGuauguacGGacgCCCGCCGCgCACCUgugauggaaGCGa -3'
miRNA:   3'- aCCCGU-------CCa--GGGCGGCG-GUGGG---------UGCg -5'
2652 5' -64.7 NC_001491.2 + 100069 0.68 0.390539
Target:  5'- cGGcGCAGGUucuUCCGCgGCUGCgUACGUg -3'
miRNA:   3'- aCC-CGUCCA---GGGCGgCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 99871 1.09 0.000482
Target:  5'- cUGGGCAGGUCCCGCCGCCACCCACGCc -3'
miRNA:   3'- -ACCCGUCCAGGGCGGCGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 99549 0.67 0.439085
Target:  5'- gUGGcgccuaaGCAGcaGUCCCGCguccuuaauaaaCGCCGCgCACGCg -3'
miRNA:   3'- -ACC-------CGUC--CAGGGCG------------GCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 92262 0.71 0.271552
Target:  5'- aGGcGCuGG-CCaUGCCgGCCACCCugGCu -3'
miRNA:   3'- aCC-CGuCCaGG-GCGG-CGGUGGGugCG- -5'
2652 5' -64.7 NC_001491.2 + 90299 0.66 0.4918
Target:  5'- aUGGGUGGGgucacacagcUCCggggguaccacuaUGCCGCUGCCCACa- -3'
miRNA:   3'- -ACCCGUCC----------AGG-------------GCGGCGGUGGGUGcg -5'
2652 5' -64.7 NC_001491.2 + 90093 0.66 0.52016
Target:  5'- aGGGCccugAGaGccgcUUCCGCCGCCGCgCGcCGCu -3'
miRNA:   3'- aCCCG----UC-C----AGGGCGGCGGUGgGU-GCG- -5'
2652 5' -64.7 NC_001491.2 + 84768 0.65 0.547252
Target:  5'- cGGGCagugccaAGGUCguaGCCGCUucuaccGCCC-CGCa -3'
miRNA:   3'- aCCCG-------UCCAGgg-CGGCGG------UGGGuGCG- -5'
2652 5' -64.7 NC_001491.2 + 69782 0.7 0.303235
Target:  5'- aGGGCGucGGUgUCGaCgGCCACUCugGCg -3'
miRNA:   3'- aCCCGU--CCAgGGC-GgCGGUGGGugCG- -5'
2652 5' -64.7 NC_001491.2 + 69340 0.67 0.439085
Target:  5'- aUGGGaCAGGgcuauuggCCCGaguuugaaguaccCCGCCAUCaGCGCg -3'
miRNA:   3'- -ACCC-GUCCa-------GGGC-------------GGCGGUGGgUGCG- -5'
2652 5' -64.7 NC_001491.2 + 64460 0.66 0.4918
Target:  5'- aGGuuucGCAGGUCCCGUagugcuuucgUGCCacuagggagaucgGCCUGCGCc -3'
miRNA:   3'- aCC----CGUCCAGGGCG----------GCGG-------------UGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 64333 0.71 0.283895
Target:  5'- cUGGGauGGUCCacaccgGCCGCCACaCACGCc -3'
miRNA:   3'- -ACCCguCCAGGg-----CGGCGGUGgGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 54445 0.69 0.336969
Target:  5'- aUGGGCuccgcacGGGcUCCCGa-GCUAUCCACGUa -3'
miRNA:   3'- -ACCCG-------UCC-AGGGCggCGGUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 42782 0.67 0.448512
Target:  5'- aGGGCucGUCUucaUGCUGUggggCGCCCACGCc -3'
miRNA:   3'- aCCCGucCAGG---GCGGCG----GUGGGUGCG- -5'
2652 5' -64.7 NC_001491.2 + 39445 0.66 0.527584
Target:  5'- --cGCGGGcCCCaGUCGCCugggugcuggccCCCGCGCa -3'
miRNA:   3'- accCGUCCaGGG-CGGCGGu-----------GGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.