miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26527 3' -60.6 NC_005357.1 + 28557 0.66 0.387688
Target:  5'- -----cGGCCGCCGgccaUCGCgGCGCGc -3'
miRNA:   3'- cuacauCCGGCGGCgc--AGCGaCGCGC- -5'
26527 3' -60.6 NC_005357.1 + 14851 0.66 0.387688
Target:  5'- -uUGgcGGCCagcGCCGCa-CGCUGgGCGc -3'
miRNA:   3'- cuACauCCGG---CGGCGcaGCGACgCGC- -5'
26527 3' -60.6 NC_005357.1 + 19493 0.66 0.378889
Target:  5'- cGGUGggcAGGCCGCUGCGaacCGUggucuUGUGCu -3'
miRNA:   3'- -CUACa--UCCGGCGGCGCa--GCG-----ACGCGc -5'
26527 3' -60.6 NC_005357.1 + 39591 0.66 0.378889
Target:  5'- uGGUGcUGGcGCCGCUGCG-CGUgGcCGCGa -3'
miRNA:   3'- -CUAC-AUC-CGGCGGCGCaGCGaC-GCGC- -5'
26527 3' -60.6 NC_005357.1 + 28085 0.66 0.370225
Target:  5'- --gGU-GGCCGCgGCGUCGUauuccGuCGCGg -3'
miRNA:   3'- cuaCAuCCGGCGgCGCAGCGa----C-GCGC- -5'
26527 3' -60.6 NC_005357.1 + 4634 0.66 0.361698
Target:  5'- gGAUGcUGGGCCacGCUGCGUCgGCcauCGCGu -3'
miRNA:   3'- -CUAC-AUCCGG--CGGCGCAG-CGac-GCGC- -5'
26527 3' -60.6 NC_005357.1 + 18882 0.66 0.353308
Target:  5'- cGAUGUcGGCCGaggccaucgaCCGCGUgCGCcgccuggaagGCGCGc -3'
miRNA:   3'- -CUACAuCCGGC----------GGCGCA-GCGa---------CGCGC- -5'
26527 3' -60.6 NC_005357.1 + 23030 0.66 0.345056
Target:  5'- -cUGuUGGGCUuguuGCUGCG-CGCUGCGUu -3'
miRNA:   3'- cuAC-AUCCGG----CGGCGCaGCGACGCGc -5'
26527 3' -60.6 NC_005357.1 + 17140 0.66 0.345056
Target:  5'- aGAUGgcgAGGCCGCuuugguacuucaCGuCGUCGaUGCGCc -3'
miRNA:   3'- -CUACa--UCCGGCG------------GC-GCAGCgACGCGc -5'
26527 3' -60.6 NC_005357.1 + 35342 0.66 0.345056
Target:  5'- --cGUGGGCgCGCCGUGgguaggcCGCgGCGUc -3'
miRNA:   3'- cuaCAUCCG-GCGGCGCa------GCGaCGCGc -5'
26527 3' -60.6 NC_005357.1 + 5320 0.66 0.341794
Target:  5'- --cGUAGGCCGCgagcacgugGCGcagcauggcaucgCGCUGCGUGg -3'
miRNA:   3'- cuaCAUCCGGCGg--------CGCa------------GCGACGCGC- -5'
26527 3' -60.6 NC_005357.1 + 14398 0.66 0.336944
Target:  5'- --cGUAGGCguagcgaaGCUggGCGUCGCcagGCGCGc -3'
miRNA:   3'- cuaCAUCCGg-------CGG--CGCAGCGa--CGCGC- -5'
26527 3' -60.6 NC_005357.1 + 15003 0.67 0.328972
Target:  5'- -----cGGCCGCCGgG-CGCgGUGCGc -3'
miRNA:   3'- cuacauCCGGCGGCgCaGCGaCGCGC- -5'
26527 3' -60.6 NC_005357.1 + 8670 0.67 0.328972
Target:  5'- uGUGUGcagcGGCUGCUGCGcCGCccaggUGUGCGc -3'
miRNA:   3'- cUACAU----CCGGCGGCGCaGCG-----ACGCGC- -5'
26527 3' -60.6 NC_005357.1 + 26205 0.67 0.321139
Target:  5'- cGGUGUAGGUCGagGCGUUuuucaUGCGCGc -3'
miRNA:   3'- -CUACAUCCGGCggCGCAGcg---ACGCGC- -5'
26527 3' -60.6 NC_005357.1 + 447 0.67 0.31421
Target:  5'- ---uUGGGCUGCUGCGcggccagcuugcgggCGCUGuCGCGg -3'
miRNA:   3'- cuacAUCCGGCGGCGCa--------------GCGAC-GCGC- -5'
26527 3' -60.6 NC_005357.1 + 21146 0.68 0.286918
Target:  5'- -----uGGCCGCCGUGUCcGCgcccugguucaacaGCGCGg -3'
miRNA:   3'- cuacauCCGGCGGCGCAG-CGa-------------CGCGC- -5'
26527 3' -60.6 NC_005357.1 + 3880 0.68 0.284082
Target:  5'- -cUGUAGGCCGCgcUGcCGUCGCcGC-CGa -3'
miRNA:   3'- cuACAUCCGGCG--GC-GCAGCGaCGcGC- -5'
26527 3' -60.6 NC_005357.1 + 2102 0.69 0.244174
Target:  5'- --gGU-GGUCGCCGUGUCGUcgguauagauUGCGCc -3'
miRNA:   3'- cuaCAuCCGGCGGCGCAGCG----------ACGCGc -5'
26527 3' -60.6 NC_005357.1 + 18077 0.69 0.237995
Target:  5'- cGUGcUGGGCCGCCGaa--GCcgGCGCGa -3'
miRNA:   3'- cUAC-AUCCGGCGGCgcagCGa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.