miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26533 3' -54.2 NC_005357.1 + 2210 0.66 0.707687
Target:  5'- gACGCCcUCGU-CGggUagCACCACGc -3'
miRNA:   3'- gUGCGGaAGCAcGCuuAg-GUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 3677 1.1 0.000976
Target:  5'- cCACGCCUUCGUGCGAAUCCACCACGGc -3'
miRNA:   3'- -GUGCGGAAGCACGCUUAGGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 4517 0.66 0.716399
Target:  5'- gGCGCCcgugaacguggCGUGCuGGGcggucgugCCGCCGCGGa -3'
miRNA:   3'- gUGCGGaa---------GCACG-CUUa-------GGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 4833 0.68 0.63003
Target:  5'- gGCGCCgUCGU-CGAAUUCACggaaaGCGGc -3'
miRNA:   3'- gUGCGGaAGCAcGCUUAGGUGg----UGCC- -5'
26533 3' -54.2 NC_005357.1 + 5752 0.68 0.618857
Target:  5'- gCGCGCCgggcaGCGAGUgCGCCAgGGc -3'
miRNA:   3'- -GUGCGGaagcaCGCUUAgGUGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 7778 0.66 0.69673
Target:  5'- uCGCGCCUUCGcccUGCGAG---GCgAUGGg -3'
miRNA:   3'- -GUGCGGAAGC---ACGCUUaggUGgUGCC- -5'
26533 3' -54.2 NC_005357.1 + 10877 0.71 0.418182
Target:  5'- gCACGCCUUCccGCGAA-CCGaggcgcuguuuCCACGGc -3'
miRNA:   3'- -GUGCGGAAGcaCGCUUaGGU-----------GGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 13501 0.67 0.638969
Target:  5'- cCGCGCCUUUGgGCGAGguaagcgguuugCCGuCCGCGc -3'
miRNA:   3'- -GUGCGGAAGCaCGCUUa-----------GGU-GGUGCc -5'
26533 3' -54.2 NC_005357.1 + 15117 0.67 0.651254
Target:  5'- gCGCGCCUgugggcgUCGUGgGAAgccUUCGCCAaGGc -3'
miRNA:   3'- -GUGCGGA-------AGCACgCUU---AGGUGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 15571 0.68 0.60101
Target:  5'- gGCGCCgucagugacgacgCGcUGCGGAUgCACCGCGc -3'
miRNA:   3'- gUGCGGaa-----------GC-ACGCUUAgGUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 16687 0.68 0.63003
Target:  5'- gCGCGCCcagCGUGCugccgccgguGAGgacgacgaccCCGCCGCGGg -3'
miRNA:   3'- -GUGCGGaa-GCACG----------CUUa---------GGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 19833 0.69 0.574383
Target:  5'- gGCGCuuCUUCGUGCaaGAUCgcaACCGCGGc -3'
miRNA:   3'- gUGCG--GAAGCACGc-UUAGg--UGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 21433 0.66 0.750635
Target:  5'- gCACGaugCUUUGcUGUGAAUCgGCCuCGGa -3'
miRNA:   3'- -GUGCg--GAAGC-ACGCUUAGgUGGuGCC- -5'
26533 3' -54.2 NC_005357.1 + 22563 0.69 0.51994
Target:  5'- gACGCCUUCGgcacgccCGAAcUCACCACGc -3'
miRNA:   3'- gUGCGGAAGCac-----GCUUaGGUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 23419 0.71 0.447484
Target:  5'- gCGCGCCggUCaGUGCGAcgCCGgC-CGGg -3'
miRNA:   3'- -GUGCGGa-AG-CACGCUuaGGUgGuGCC- -5'
26533 3' -54.2 NC_005357.1 + 23524 0.66 0.740054
Target:  5'- gCGCGCCUUCcagGCGGcgCa--CGCGGu -3'
miRNA:   3'- -GUGCGGAAGca-CGCUuaGgugGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 23764 0.66 0.729362
Target:  5'- gGCGCCacCGgGCcGAUgCGCCGCGGc -3'
miRNA:   3'- gUGCGGaaGCaCGcUUAgGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 24175 0.66 0.750635
Target:  5'- uGCGCgCUUCG-GCGuGUCCAUgagCGCGa -3'
miRNA:   3'- gUGCG-GAAGCaCGCuUAGGUG---GUGCc -5'
26533 3' -54.2 NC_005357.1 + 24554 0.66 0.729362
Target:  5'- uCGCGCagcgCGgcgaugGCGAggCCGgCCACGGu -3'
miRNA:   3'- -GUGCGgaa-GCa-----CGCUuaGGU-GGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 25364 0.66 0.707687
Target:  5'- -uCGCCUUCGUGCGcgaggugaagGAUUCgGCCAagaaGGu -3'
miRNA:   3'- guGCGGAAGCACGC----------UUAGG-UGGUg---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.