miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26533 3' -54.2 NC_005357.1 + 40728 0.66 0.740054
Target:  5'- gCACGCCggcccaCG-GCGAAUuucucgacuaCCugCGCGGc -3'
miRNA:   3'- -GUGCGGaa----GCaCGCUUA----------GGugGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 40453 0.67 0.685708
Target:  5'- gCGCGCCUacagCGUGCcu-UCCcCCAgGGc -3'
miRNA:   3'- -GUGCGGAa---GCACGcuuAGGuGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 38055 0.66 0.729362
Target:  5'- gGCGCCUggcUGCGcAUCCGCCugccgucCGGc -3'
miRNA:   3'- gUGCGGAagcACGCuUAGGUGGu------GCC- -5'
26533 3' -54.2 NC_005357.1 + 37396 0.67 0.674633
Target:  5'- gACGCCaUCGaGCGGGg-CAUCGCGGc -3'
miRNA:   3'- gUGCGGaAGCaCGCUUagGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 35415 0.66 0.707687
Target:  5'- aACGCCaaguccUCGUucaugGCGAAUCgGgCGCGGa -3'
miRNA:   3'- gUGCGGa-----AGCA-----CGCUUAGgUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 33485 0.7 0.498718
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 33437 0.7 0.498718
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 33213 0.66 0.740054
Target:  5'- gCGCGCCgcagaaCGUGCGccgcgCCGCCGagcaGGc -3'
miRNA:   3'- -GUGCGGaa----GCACGCuua--GGUGGUg---CC- -5'
26533 3' -54.2 NC_005357.1 + 33112 0.68 0.607697
Target:  5'- cCGCGCCgaCGUGCG---CCGCCA-GGu -3'
miRNA:   3'- -GUGCGGaaGCACGCuuaGGUGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 32672 0.66 0.707687
Target:  5'- uCugGaCUUCGagGCGAAgcgcgcCCACCACGa -3'
miRNA:   3'- -GugCgGAAGCa-CGCUUa-----GGUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 30994 0.68 0.618857
Target:  5'- uCGCGCCUuaUCG-GCGA--CCugCACGc -3'
miRNA:   3'- -GUGCGGA--AGCaCGCUuaGGugGUGCc -5'
26533 3' -54.2 NC_005357.1 + 30076 0.69 0.563365
Target:  5'- ---uCCUUUGUGCGGcgCCcgggcGCCACGGc -3'
miRNA:   3'- gugcGGAAGCACGCUuaGG-----UGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 27574 0.73 0.346067
Target:  5'- gGCGCCcagCGUGCGGcgcuggCCGCCAaCGGc -3'
miRNA:   3'- gUGCGGaa-GCACGCUua----GGUGGU-GCC- -5'
26533 3' -54.2 NC_005357.1 + 26654 0.66 0.718569
Target:  5'- cUAUGCCgUCGUGCG--UCgCACCauugGCGGc -3'
miRNA:   3'- -GUGCGGaAGCACGCuuAG-GUGG----UGCC- -5'
26533 3' -54.2 NC_005357.1 + 26596 0.7 0.509283
Target:  5'- aCACGgaCggCGUGUucGAGUCCugCGCGGu -3'
miRNA:   3'- -GUGCg-GaaGCACG--CUUAGGugGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 26001 0.66 0.750635
Target:  5'- aACGCCgcCG-GCGAuuaCC-CCGCGGc -3'
miRNA:   3'- gUGCGGaaGCaCGCUua-GGuGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 25364 0.66 0.707687
Target:  5'- -uCGCCUUCGUGCGcgaggugaagGAUUCgGCCAagaaGGu -3'
miRNA:   3'- guGCGGAAGCACGC----------UUAGG-UGGUg---CC- -5'
26533 3' -54.2 NC_005357.1 + 24554 0.66 0.729362
Target:  5'- uCGCGCagcgCGgcgaugGCGAggCCGgCCACGGu -3'
miRNA:   3'- -GUGCGgaa-GCa-----CGCUuaGGU-GGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 24175 0.66 0.750635
Target:  5'- uGCGCgCUUCG-GCGuGUCCAUgagCGCGa -3'
miRNA:   3'- gUGCG-GAAGCaCGCuUAGGUG---GUGCc -5'
26533 3' -54.2 NC_005357.1 + 23764 0.66 0.729362
Target:  5'- gGCGCCacCGgGCcGAUgCGCCGCGGc -3'
miRNA:   3'- gUGCGGaaGCaCGcUUAgGUGGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.