miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26533 3' -54.2 NC_005357.1 + 23419 0.71 0.447484
Target:  5'- gCGCGCCggUCaGUGCGAcgCCGgC-CGGg -3'
miRNA:   3'- -GUGCGGa-AG-CACGCUuaGGUgGuGCC- -5'
26533 3' -54.2 NC_005357.1 + 24175 0.66 0.750635
Target:  5'- uGCGCgCUUCG-GCGuGUCCAUgagCGCGa -3'
miRNA:   3'- gUGCG-GAAGCaCGCuUAGGUG---GUGCc -5'
26533 3' -54.2 NC_005357.1 + 23524 0.66 0.740054
Target:  5'- gCGCGCCUUCcagGCGGcgCa--CGCGGu -3'
miRNA:   3'- -GUGCGGAAGca-CGCUuaGgugGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 38055 0.66 0.729362
Target:  5'- gGCGCCUggcUGCGcAUCCGCCugccgucCGGc -3'
miRNA:   3'- gUGCGGAagcACGCuUAGGUGGu------GCC- -5'
26533 3' -54.2 NC_005357.1 + 24554 0.66 0.729362
Target:  5'- uCGCGCagcgCGgcgaugGCGAggCCGgCCACGGu -3'
miRNA:   3'- -GUGCGgaa-GCa-----CGCUuaGGU-GGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 23764 0.66 0.729362
Target:  5'- gGCGCCacCGgGCcGAUgCGCCGCGGc -3'
miRNA:   3'- gUGCGGaaGCaCGcUUAgGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 4517 0.66 0.716399
Target:  5'- gGCGCCcgugaacguggCGUGCuGGGcggucgugCCGCCGCGGa -3'
miRNA:   3'- gUGCGGaa---------GCACG-CUUa-------GGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 2210 0.66 0.707687
Target:  5'- gACGCCcUCGU-CGggUagCACCACGc -3'
miRNA:   3'- gUGCGGaAGCAcGCuuAg-GUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 40453 0.67 0.685708
Target:  5'- gCGCGCCUacagCGUGCcu-UCCcCCAgGGc -3'
miRNA:   3'- -GUGCGGAa---GCACGcuuAGGuGGUgCC- -5'
26533 3' -54.2 NC_005357.1 + 33437 0.7 0.498718
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 33485 0.7 0.498718
Target:  5'- gCACgGCCacCGcugGCGAAUCCGgCACGGc -3'
miRNA:   3'- -GUG-CGGaaGCa--CGCUUAGGUgGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 30076 0.69 0.563365
Target:  5'- ---uCCUUUGUGCGGcgCCcgggcGCCACGGc -3'
miRNA:   3'- gugcGGAAGCACGCUuaGG-----UGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 15571 0.68 0.60101
Target:  5'- gGCGCCgucagugacgacgCGcUGCGGAUgCACCGCGc -3'
miRNA:   3'- gUGCGGaa-----------GC-ACGCUUAgGUGGUGCc -5'
26533 3' -54.2 NC_005357.1 + 13501 0.67 0.638969
Target:  5'- cCGCGCCUUUGgGCGAGguaagcgguuugCCGuCCGCGc -3'
miRNA:   3'- -GUGCGGAAGCaCGCUUa-----------GGU-GGUGCc -5'
26533 3' -54.2 NC_005357.1 + 37396 0.67 0.674633
Target:  5'- gACGCCaUCGaGCGGGg-CAUCGCGGc -3'
miRNA:   3'- gUGCGGaAGCaCGCUUagGUGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 26001 0.66 0.750635
Target:  5'- aACGCCgcCG-GCGAuuaCC-CCGCGGc -3'
miRNA:   3'- gUGCGGaaGCaCGCUua-GGuGGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 27574 0.73 0.346067
Target:  5'- gGCGCCcagCGUGCGGcgcuggCCGCCAaCGGc -3'
miRNA:   3'- gUGCGGaa-GCACGCUua----GGUGGU-GCC- -5'
26533 3' -54.2 NC_005357.1 + 10877 0.71 0.418182
Target:  5'- gCACGCCUUCccGCGAA-CCGaggcgcuguuuCCACGGc -3'
miRNA:   3'- -GUGCGGAAGcaCGCUUaGGU-----------GGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 26596 0.7 0.509283
Target:  5'- aCACGgaCggCGUGUucGAGUCCugCGCGGu -3'
miRNA:   3'- -GUGCg-GaaGCACG--CUUAGGugGUGCC- -5'
26533 3' -54.2 NC_005357.1 + 22563 0.69 0.51994
Target:  5'- gACGCCUUCGgcacgccCGAAcUCACCACGc -3'
miRNA:   3'- gUGCGGAAGCac-----GCUUaGGUGGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.