Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26533 | 3' | -54.2 | NC_005357.1 | + | 33112 | 0.68 | 0.607697 |
Target: 5'- cCGCGCCgaCGUGCG---CCGCCA-GGu -3' miRNA: 3'- -GUGCGGaaGCACGCuuaGGUGGUgCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 33213 | 0.66 | 0.740054 |
Target: 5'- gCGCGCCgcagaaCGUGCGccgcgCCGCCGagcaGGc -3' miRNA: 3'- -GUGCGGaa----GCACGCuua--GGUGGUg---CC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 21433 | 0.66 | 0.750635 |
Target: 5'- gCACGaugCUUUGcUGUGAAUCgGCCuCGGa -3' miRNA: 3'- -GUGCg--GAAGC-ACGCUUAGgUGGuGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 26001 | 0.66 | 0.750635 |
Target: 5'- aACGCCgcCG-GCGAuuaCC-CCGCGGc -3' miRNA: 3'- gUGCGGaaGCaCGCUua-GGuGGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 3677 | 1.1 | 0.000976 |
Target: 5'- cCACGCCUUCGUGCGAAUCCACCACGGc -3' miRNA: 3'- -GUGCGGAAGCACGCUUAGGUGGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 27574 | 0.73 | 0.346067 |
Target: 5'- gGCGCCcagCGUGCGGcgcuggCCGCCAaCGGc -3' miRNA: 3'- gUGCGGaa-GCACGCUua----GGUGGU-GCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 10877 | 0.71 | 0.418182 |
Target: 5'- gCACGCCUUCccGCGAA-CCGaggcgcuguuuCCACGGc -3' miRNA: 3'- -GUGCGGAAGcaCGCUUaGGU-----------GGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 26596 | 0.7 | 0.509283 |
Target: 5'- aCACGgaCggCGUGUucGAGUCCugCGCGGu -3' miRNA: 3'- -GUGCg-GaaGCACG--CUUAGGugGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 22563 | 0.69 | 0.51994 |
Target: 5'- gACGCCUUCGgcacgccCGAAcUCACCACGc -3' miRNA: 3'- gUGCGGAAGCac-----GCUUaGGUGGUGCc -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 26654 | 0.66 | 0.718569 |
Target: 5'- cUAUGCCgUCGUGCG--UCgCACCauugGCGGc -3' miRNA: 3'- -GUGCGGaAGCACGCuuAG-GUGG----UGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 25364 | 0.66 | 0.707687 |
Target: 5'- -uCGCCUUCGUGCGcgaggugaagGAUUCgGCCAagaaGGu -3' miRNA: 3'- guGCGGAAGCACGC----------UUAGG-UGGUg---CC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 7778 | 0.66 | 0.69673 |
Target: 5'- uCGCGCCUUCGcccUGCGAG---GCgAUGGg -3' miRNA: 3'- -GUGCGGAAGC---ACGCUUaggUGgUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 5752 | 0.68 | 0.618857 |
Target: 5'- gCGCGCCgggcaGCGAGUgCGCCAgGGc -3' miRNA: 3'- -GUGCGGaagcaCGCUUAgGUGGUgCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 32672 | 0.66 | 0.707687 |
Target: 5'- uCugGaCUUCGagGCGAAgcgcgcCCACCACGa -3' miRNA: 3'- -GugCgGAAGCa-CGCUUa-----GGUGGUGCc -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 30994 | 0.68 | 0.618857 |
Target: 5'- uCGCGCCUuaUCG-GCGA--CCugCACGc -3' miRNA: 3'- -GUGCGGA--AGCaCGCUuaGGugGUGCc -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 15117 | 0.67 | 0.651254 |
Target: 5'- gCGCGCCUgugggcgUCGUGgGAAgccUUCGCCAaGGc -3' miRNA: 3'- -GUGCGGA-------AGCACgCUU---AGGUGGUgCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 35415 | 0.66 | 0.707687 |
Target: 5'- aACGCCaaguccUCGUucaugGCGAAUCgGgCGCGGa -3' miRNA: 3'- gUGCGGa-----AGCA-----CGCUUAGgUgGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 40728 | 0.66 | 0.740054 |
Target: 5'- gCACGCCggcccaCG-GCGAAUuucucgacuaCCugCGCGGc -3' miRNA: 3'- -GUGCGGaa----GCaCGCUUA----------GGugGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 16687 | 0.68 | 0.63003 |
Target: 5'- gCGCGCCcagCGUGCugccgccgguGAGgacgacgaccCCGCCGCGGg -3' miRNA: 3'- -GUGCGGaa-GCACG----------CUUa---------GGUGGUGCC- -5' |
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26533 | 3' | -54.2 | NC_005357.1 | + | 4833 | 0.68 | 0.63003 |
Target: 5'- gGCGCCgUCGU-CGAAUUCACggaaaGCGGc -3' miRNA: 3'- gUGCGGaAGCAcGCUUAGGUGg----UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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