miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26535 5' -58.6 NC_005357.1 + 41960 0.66 0.431115
Target:  5'- uGGCGAUuGUcgaagCGGuGGUGCGCGGCGa -3'
miRNA:   3'- gCCGUUGcCAa----GCU-CCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 41218 0.66 0.450613
Target:  5'- -aGCAAUGGgUCGAaaaGGCG-ACGGCGUa -3'
miRNA:   3'- gcCGUUGCCaAGCU---CCGCgUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 39508 0.71 0.221955
Target:  5'- gGGCcgucgaacucgAACGcGaacaUCGGGGCGCGCGGCGUc -3'
miRNA:   3'- gCCG-----------UUGC-Ca---AGCUCCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 38952 0.7 0.249022
Target:  5'- gGGCcgucguucucguucGCGuucUUCGGGGCGCGCGGCGUc -3'
miRNA:   3'- gCCGu-------------UGCc--AAGCUCCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 38799 0.71 0.227878
Target:  5'- gGGUAACGaGUUCGGcGGCGUgaAUGGCGc -3'
miRNA:   3'- gCCGUUGC-CAAGCU-CCGCG--UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 38549 0.66 0.460541
Target:  5'- gCGGCGACGGcagCGcGGCcuacaGCgACGGCGc -3'
miRNA:   3'- -GCCGUUGCCaa-GCuCCG-----CG-UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 35935 0.66 0.431115
Target:  5'- aCGGCaAGCGcGUgaaugCG-GGCcuGCGCGGCGUg -3'
miRNA:   3'- -GCCG-UUGC-CAa----GCuCCG--CGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 34883 0.72 0.199562
Target:  5'- uGGCGccGCGGaUCGAGcacgccgccgaGCGCACGGUAg -3'
miRNA:   3'- gCCGU--UGCCaAGCUC-----------CGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 34795 0.69 0.283026
Target:  5'- cCGGCGugGG-UCGAGccGCGCccccugaccaucaccACGGCAg -3'
miRNA:   3'- -GCCGUugCCaAGCUC--CGCG---------------UGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 34385 0.68 0.317464
Target:  5'- uCGaGCAGCGGUugagcgUCGAGGCuGuCAcCGGCGa -3'
miRNA:   3'- -GC-CGUUGCCA------AGCUCCG-C-GU-GCCGUa -5'
26535 5' -58.6 NC_005357.1 + 34256 0.68 0.325355
Target:  5'- cCGGCAGCa--UCcGGGCGCACGcGCAg -3'
miRNA:   3'- -GCCGUUGccaAGcUCCGCGUGC-CGUa -5'
26535 5' -58.6 NC_005357.1 + 33162 0.68 0.333392
Target:  5'- gGGCGAUGGUggaguugCGgaaguGGGCGCccuCGGCAc -3'
miRNA:   3'- gCCGUUGCCAa------GC-----UCCGCGu--GCCGUa -5'
26535 5' -58.6 NC_005357.1 + 32701 0.66 0.431115
Target:  5'- aCGaGCAguucgcccGCGGcUUCGAGGCGUAUcucuucgagGGCAa -3'
miRNA:   3'- -GC-CGU--------UGCC-AAGCUCCGCGUG---------CCGUa -5'
26535 5' -58.6 NC_005357.1 + 32420 0.72 0.179162
Target:  5'- gGGCGGgGGc-CG-GGCGCGCGGCAc -3'
miRNA:   3'- gCCGUUgCCaaGCuCCGCGUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 31206 0.66 0.450613
Target:  5'- gGGCGuggGCGGgaaCGuGGCggucauGCGCGGCAUu -3'
miRNA:   3'- gCCGU---UGCCaa-GCuCCG------CGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 28899 0.68 0.317464
Target:  5'- gCGGcCGACaGUUCGGcGCGgACGGCAa -3'
miRNA:   3'- -GCC-GUUGcCAAGCUcCGCgUGCCGUa -5'
26535 5' -58.6 NC_005357.1 + 28747 0.72 0.199029
Target:  5'- uGGCAucguccagcGCGGUgcgcuucUCGGcGCGCACGGCGUc -3'
miRNA:   3'- gCCGU---------UGCCA-------AGCUcCGCGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 28056 0.72 0.183585
Target:  5'- uCGGCGACGGUcugcUCGAacagcgggcagguGGC-CGCGGCGUc -3'
miRNA:   3'- -GCCGUUGCCA----AGCU-------------CCGcGUGCCGUA- -5'
26535 5' -58.6 NC_005357.1 + 26680 0.7 0.265583
Target:  5'- gCGGCAacgagguGCGGUaugUCGA-GCGCAUGGCc- -3'
miRNA:   3'- -GCCGU-------UGCCA---AGCUcCGCGUGCCGua -5'
26535 5' -58.6 NC_005357.1 + 26598 0.67 0.412121
Target:  5'- aCGGaCGGCGuGUUCGAGuccUGCGCGGUg- -3'
miRNA:   3'- -GCC-GUUGC-CAAGCUCc--GCGUGCCGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.