miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26536 3' -54.1 NC_005357.1 + 39483 0.66 0.757509
Target:  5'- uUCUCGcGCuGCGAacUGGAa-CAAcGGGCCg -3'
miRNA:   3'- -GGAGC-CGcUGCU--ACCUaaGUU-CCCGG- -5'
26536 3' -54.1 NC_005357.1 + 15022 0.66 0.754381
Target:  5'- gCCaggCGcGCGACGAcuacaagagcgacaUGGAUUUGcuGGCCg -3'
miRNA:   3'- -GGa--GC-CGCUGCU--------------ACCUAAGUucCCGG- -5'
26536 3' -54.1 NC_005357.1 + 33160 0.66 0.747038
Target:  5'- -gUgGGCGAUGGUGGAguugCGGaaguGGGCg -3'
miRNA:   3'- ggAgCCGCUGCUACCUaa--GUU----CCCGg -5'
26536 3' -54.1 NC_005357.1 + 327 0.66 0.747038
Target:  5'- aCCgucaGGCuGGCGGUGGcgUCGcgcAGcaGGCCg -3'
miRNA:   3'- -GGag--CCG-CUGCUACCuaAGU---UC--CCGG- -5'
26536 3' -54.1 NC_005357.1 + 29965 0.66 0.735383
Target:  5'- gUCgCGGCGcACGAcggccUGGAUgcagccgUCGAacGGGCCa -3'
miRNA:   3'- -GGaGCCGC-UGCU-----ACCUA-------AGUU--CCCGG- -5'
26536 3' -54.1 NC_005357.1 + 17749 0.66 0.725751
Target:  5'- gCCUgGGCGugGAcgUGGcccgCGGcGGGCg -3'
miRNA:   3'- -GGAgCCGCugCU--ACCuaa-GUU-CCCGg -5'
26536 3' -54.1 NC_005357.1 + 41135 0.66 0.719285
Target:  5'- cCCUgGGCGcgGCGGUGuGGgcgggCAucaccucgaaacuugGGGGCCa -3'
miRNA:   3'- -GGAgCCGC--UGCUAC-CUaa---GU---------------UCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 20092 0.67 0.70408
Target:  5'- uCCUUGGCGACuucGGAa--AAGGcGCCc -3'
miRNA:   3'- -GGAGCCGCUGcuaCCUaagUUCC-CGG- -5'
26536 3' -54.1 NC_005357.1 + 30858 0.67 0.682122
Target:  5'- cCCUgGGCGGC-AUGGcUUCGAugaccggcGGGCa -3'
miRNA:   3'- -GGAgCCGCUGcUACCuAAGUU--------CCCGg -5'
26536 3' -54.1 NC_005357.1 + 14815 0.67 0.671064
Target:  5'- aCCUCGGCGGCGcUGccUUCGcccAGGucgauGCCg -3'
miRNA:   3'- -GGAGCCGCUGCuACcuAAGU---UCC-----CGG- -5'
26536 3' -54.1 NC_005357.1 + 9312 0.67 0.668847
Target:  5'- --aCGGCGACauucagggccuUGGGUUCAuGGGCg -3'
miRNA:   3'- ggaGCCGCUGcu---------ACCUAAGUuCCCGg -5'
26536 3' -54.1 NC_005357.1 + 14219 0.68 0.648846
Target:  5'- uCgUCGGCGugGccgaccUGGA--CAAGGcGCCg -3'
miRNA:   3'- -GgAGCCGCugCu-----ACCUaaGUUCC-CGG- -5'
26536 3' -54.1 NC_005357.1 + 8625 0.68 0.648846
Target:  5'- uUCUCGGCcgcuGCGGUGGcgaggUCGccGGCCu -3'
miRNA:   3'- -GGAGCCGc---UGCUACCua---AGUucCCGG- -5'
26536 3' -54.1 NC_005357.1 + 33593 0.68 0.648846
Target:  5'- aCgUCGGCGAgGAcGGuaUCAA-GGCCg -3'
miRNA:   3'- -GgAGCCGCUgCUaCCuaAGUUcCCGG- -5'
26536 3' -54.1 NC_005357.1 + 683 0.68 0.637708
Target:  5'- gCCUaCGGCGGCGccGGcc----GGGCCg -3'
miRNA:   3'- -GGA-GCCGCUGCuaCCuaaguuCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 23783 0.68 0.637708
Target:  5'- gCCgCGGCuACGAagaUGGAUUCcguGGuGCCg -3'
miRNA:   3'- -GGaGCCGcUGCU---ACCUAAGuu-CC-CGG- -5'
26536 3' -54.1 NC_005357.1 + 8241 0.68 0.637708
Target:  5'- cCCUCGuCGGCGAagucgcUGGAaucauccgggcaUUCGgcuuccAGGGCCa -3'
miRNA:   3'- -GGAGCcGCUGCU------ACCU------------AAGU------UCCCGG- -5'
26536 3' -54.1 NC_005357.1 + 32985 0.68 0.634365
Target:  5'- cCCUCGGCGugGAcGcGAccaacgacgcuaUUCAAGaccugcaagcccgcGGCCu -3'
miRNA:   3'- -GGAGCCGCugCUaC-CU------------AAGUUC--------------CCGG- -5'
26536 3' -54.1 NC_005357.1 + 5474 0.68 0.626565
Target:  5'- gCCgCGGuCGuuGAUGGucuggUCGAGGuGCCa -3'
miRNA:   3'- -GGaGCC-GCugCUACCua---AGUUCC-CGG- -5'
26536 3' -54.1 NC_005357.1 + 8447 0.68 0.615426
Target:  5'- -aUCGGCG-CGAUgucGGcgUCGAGGugGCCu -3'
miRNA:   3'- ggAGCCGCuGCUA---CCuaAGUUCC--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.