Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26536 | 3' | -54.1 | NC_005357.1 | + | 633 | 0.73 | 0.344123 |
Target: 5'- gCCUCGGCG-CGGgugaacGGGUcaggCGGGGGCUu -3' miRNA: 3'- -GGAGCCGCuGCUa-----CCUAa---GUUCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 41135 | 0.66 | 0.719285 |
Target: 5'- cCCUgGGCGcgGCGGUGuGGgcgggCAucaccucgaaacuugGGGGCCa -3' miRNA: 3'- -GGAgCCGC--UGCUAC-CUaa---GU---------------UCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 15022 | 0.66 | 0.754381 |
Target: 5'- gCCaggCGcGCGACGAcuacaagagcgacaUGGAUUUGcuGGCCg -3' miRNA: 3'- -GGa--GC-CGCUGCU--------------ACCUAAGUucCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 39483 | 0.66 | 0.757509 |
Target: 5'- uUCUCGcGCuGCGAacUGGAa-CAAcGGGCCg -3' miRNA: 3'- -GGAGC-CGcUGCU--ACCUaaGUU-CCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 7144 | 0.7 | 0.48541 |
Target: 5'- uCgUCGGCuGCGGccUGGAUgaccAGGGCCg -3' miRNA: 3'- -GgAGCCGcUGCU--ACCUAagu-UCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 34523 | 0.7 | 0.506326 |
Target: 5'- cCCUCGGCaa-GAUGGGaggcaAAGGGCa -3' miRNA: 3'- -GGAGCCGcugCUACCUaag--UUCCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 8447 | 0.68 | 0.615426 |
Target: 5'- -aUCGGCG-CGAUgucGGcgUCGAGGugGCCu -3' miRNA: 3'- ggAGCCGCuGCUA---CCuaAGUUCC--CGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 2046 | 1.14 | 0.000538 |
Target: 5'- gCCUCGGCGACGAUGGAUUCAAGGGCCu -3' miRNA: 3'- -GGAGCCGCUGCUACCUAAGUUCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 4612 | 0.81 | 0.114692 |
Target: 5'- gCCUCGGCGAUGAUgucggcggGGAUgcu-GGGCCa -3' miRNA: 3'- -GGAGCCGCUGCUA--------CCUAaguuCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 30858 | 0.67 | 0.682122 |
Target: 5'- cCCUgGGCGGC-AUGGcUUCGAugaccggcGGGCa -3' miRNA: 3'- -GGAgCCGCUGcUACCuAAGUU--------CCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 8241 | 0.68 | 0.637708 |
Target: 5'- cCCUCGuCGGCGAagucgcUGGAaucauccgggcaUUCGgcuuccAGGGCCa -3' miRNA: 3'- -GGAGCcGCUGCU------ACCU------------AAGU------UCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 32985 | 0.68 | 0.634365 |
Target: 5'- cCCUCGGCGugGAcGcGAccaacgacgcuaUUCAAGaccugcaagcccgcGGCCu -3' miRNA: 3'- -GGAGCCGCugCUaC-CU------------AAGUUC--------------CCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 10290 | 0.73 | 0.344123 |
Target: 5'- gUUCGGCcuUGAgGGAUUCGGGGGCg -3' miRNA: 3'- gGAGCCGcuGCUaCCUAAGUUCCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 14219 | 0.68 | 0.648846 |
Target: 5'- uCgUCGGCGugGccgaccUGGA--CAAGGcGCCg -3' miRNA: 3'- -GgAGCCGCugCu-----ACCUaaGUUCC-CGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 17111 | 0.73 | 0.369919 |
Target: 5'- uCC-CGGCGACGAgcgccGGuggC-AGGGCCg -3' miRNA: 3'- -GGaGCCGCUGCUa----CCuaaGuUCCCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 5474 | 0.68 | 0.626565 |
Target: 5'- gCCgCGGuCGuuGAUGGucuggUCGAGGuGCCa -3' miRNA: 3'- -GGaGCC-GCugCUACCua---AGUUCC-CGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 9312 | 0.67 | 0.668847 |
Target: 5'- --aCGGCGACauucagggccuUGGGUUCAuGGGCg -3' miRNA: 3'- ggaGCCGCUGcu---------ACCUAAGUuCCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 17749 | 0.66 | 0.725751 |
Target: 5'- gCCUgGGCGugGAcgUGGcccgCGGcGGGCg -3' miRNA: 3'- -GGAgCCGCugCU--ACCuaa-GUU-CCCGg -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 10074 | 0.71 | 0.454838 |
Target: 5'- gCCUCGGCGGCGAccgcagcgaccUGGGcggcgguugUCGGGacgccGGCCu -3' miRNA: 3'- -GGAGCCGCUGCU-----------ACCUa--------AGUUC-----CCGG- -5' |
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26536 | 3' | -54.1 | NC_005357.1 | + | 10601 | 0.69 | 0.582139 |
Target: 5'- uCgUCGGUGAgGGUGcgcaGGUUCAuGGGCUu -3' miRNA: 3'- -GgAGCCGCUgCUAC----CUAAGUuCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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