Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 5' | -53 | NC_005357.1 | + | 379 | 1.11 | 0.000844 |
Target: 5'- aCACGAAAUAGACGAUGCCCAGGGCGCc -3' miRNA: 3'- -GUGCUUUAUCUGCUACGGGUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 1600 | 0.66 | 0.736862 |
Target: 5'- aCACGggGUcGAgGGUcgGCCCuucguagucGGGCGUg -3' miRNA: 3'- -GUGCuuUAuCUgCUA--CGGGu--------CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 7018 | 0.66 | 0.779314 |
Target: 5'- uCGCGuGAUGGGCGuuuGUGCCgccuguugCAGcaGGCGCa -3' miRNA: 3'- -GUGCuUUAUCUGC---UACGG--------GUC--CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 7112 | 0.75 | 0.2973 |
Target: 5'- gCACGA--UGGACugcguGAUGCCCagcgguugcauaAGGGCGCu -3' miRNA: 3'- -GUGCUuuAUCUG-----CUACGGG------------UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 7999 | 0.71 | 0.45983 |
Target: 5'- cCACGgcGUcGGACG-UGCCCuuGGCGCc -3' miRNA: 3'- -GUGCuuUA-UCUGCuACGGGucCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 8163 | 0.66 | 0.758364 |
Target: 5'- -uCGAu---GAUGcgGCCCAGgaaGGCGCu -3' miRNA: 3'- guGCUuuauCUGCuaCGGGUC---CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 8724 | 0.76 | 0.260842 |
Target: 5'- aCACGA---AGAUG-UGCCCGgcGGGCGCg -3' miRNA: 3'- -GUGCUuuaUCUGCuACGGGU--CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 9231 | 0.72 | 0.400405 |
Target: 5'- cCGCGAuagccagcGGUGGcCG-UGCCgAGGGCGCc -3' miRNA: 3'- -GUGCU--------UUAUCuGCuACGGgUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 9728 | 0.66 | 0.747676 |
Target: 5'- -uCGAAGccgcGGGCGAacUGCUCGugguGGGCGCg -3' miRNA: 3'- guGCUUUa---UCUGCU--ACGGGU----CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 12114 | 0.68 | 0.635967 |
Target: 5'- aCGCGAAGUAcACGcaaagcgGCUCgcaGGGGCGCu -3' miRNA: 3'- -GUGCUUUAUcUGCua-----CGGG---UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 12392 | 0.66 | 0.78955 |
Target: 5'- uGCGAAuacGUGGuguGggGCaCCaAGGGCGCg -3' miRNA: 3'- gUGCUU---UAUCug-CuaCG-GG-UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 13372 | 0.83 | 0.091693 |
Target: 5'- uCugGAAAUAGGCcAUGCCCAGcGCGCg -3' miRNA: 3'- -GugCUUUAUCUGcUACGGGUCcCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 13480 | 0.69 | 0.613204 |
Target: 5'- gCAUGAccUGGGCGAUGCCgAccgcgccuuuGGGCGa -3' miRNA: 3'- -GUGCUuuAUCUGCUACGGgU----------CCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 13689 | 0.73 | 0.390986 |
Target: 5'- cCGCGc--UGGACGAUGCCaa-GGCGCu -3' miRNA: 3'- -GUGCuuuAUCUGCUACGGgucCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 14052 | 0.79 | 0.15899 |
Target: 5'- gCGCGAAAgcccggcgcUGGGCGucguUGCCUAGGGUGCc -3' miRNA: 3'- -GUGCUUU---------AUCUGCu---ACGGGUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 14407 | 0.66 | 0.747676 |
Target: 5'- aGCGAAGcUGGGCGucg-CCAGGcGCGCc -3' miRNA: 3'- gUGCUUU-AUCUGCuacgGGUCC-CGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 15001 | 0.7 | 0.512733 |
Target: 5'- uGCGGccgccgGGcGCGGUGCgCCAGGcGCGCg -3' miRNA: 3'- gUGCUuua---UC-UGCUACG-GGUCC-CGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 15031 | 0.66 | 0.758364 |
Target: 5'- cCGCGuuGGUGuuGGCGAUGCCCGcguugaugcGGGCa- -3' miRNA: 3'- -GUGCu-UUAU--CUGCUACGGGU---------CCCGcg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 15146 | 0.68 | 0.624582 |
Target: 5'- gGCGGc--GGAUGc-GCCCAGGGCGa -3' miRNA: 3'- gUGCUuuaUCUGCuaCGGGUCCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 17750 | 0.74 | 0.329225 |
Target: 5'- cCugGgcGUGGACGugGCCCGcggcGGGCGCg -3' miRNA: 3'- -GugCuuUAUCUGCuaCGGGU----CCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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