Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 5' | -53 | NC_005357.1 | + | 27303 | 0.66 | 0.779314 |
Target: 5'- gGCGAAGgcuucccACGAcGCCCAcaGGCGCg -3' miRNA: 3'- gUGCUUUauc----UGCUaCGGGUc-CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 34633 | 0.67 | 0.681354 |
Target: 5'- aGCGAGugGGAC-AUGCCCaucgccucgcAGGGCGa -3' miRNA: 3'- gUGCUUuaUCUGcUACGGG----------UCCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 29284 | 0.67 | 0.71933 |
Target: 5'- gACGugGUAGGCGAcgaacugcuggcccuUGCCCAGcacuucaaGGCGg -3' miRNA: 3'- gUGCuuUAUCUGCU---------------ACGGGUC--------CCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 37728 | 0.67 | 0.725935 |
Target: 5'- cUACGAGGgcGGCGucgGUGCCUuucucaccGGGGCGg -3' miRNA: 3'- -GUGCUUUauCUGC---UACGGG--------UCCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 1600 | 0.66 | 0.736862 |
Target: 5'- aCACGggGUcGAgGGUcgGCCCuucguagucGGGCGUg -3' miRNA: 3'- -GUGCuuUAuCUgCUA--CGGGu--------CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 9728 | 0.66 | 0.747676 |
Target: 5'- -uCGAAGccgcGGGCGAacUGCUCGugguGGGCGCg -3' miRNA: 3'- guGCUUUa---UCUGCU--ACGGGU----CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 14407 | 0.66 | 0.747676 |
Target: 5'- aGCGAAGcUGGGCGucg-CCAGGcGCGCc -3' miRNA: 3'- gUGCUUU-AUCUGCuacgGGUCC-CGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 36021 | 0.66 | 0.758364 |
Target: 5'- gACGAGuucGACGAcaucaCCgAGGGCGCc -3' miRNA: 3'- gUGCUUuauCUGCUac---GGgUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 15031 | 0.66 | 0.758364 |
Target: 5'- cCGCGuuGGUGuuGGCGAUGCCCGcguugaugcGGGCa- -3' miRNA: 3'- -GUGCu-UUAU--CUGCUACGGGU---------CCCGcg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 25775 | 0.68 | 0.635967 |
Target: 5'- gGCGGcaacGAUGGccGCGAUGCgCGcGGCGCg -3' miRNA: 3'- gUGCU----UUAUC--UGCUACGgGUcCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 15146 | 0.68 | 0.624582 |
Target: 5'- gGCGGc--GGAUGc-GCCCAGGGCGa -3' miRNA: 3'- gUGCUuuaUCUGCuaCGGGUCCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 13480 | 0.69 | 0.613204 |
Target: 5'- gCAUGAccUGGGCGAUGCCgAccgcgccuuuGGGCGa -3' miRNA: 3'- -GUGCUuuAUCUGCUACGGgU----------CCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 13372 | 0.83 | 0.091693 |
Target: 5'- uCugGAAAUAGGCcAUGCCCAGcGCGCg -3' miRNA: 3'- -GugCUUUAUCUGcUACGGGUCcCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 14052 | 0.79 | 0.15899 |
Target: 5'- gCGCGAAAgcccggcgcUGGGCGucguUGCCUAGGGUGCc -3' miRNA: 3'- -GUGCUUU---------AUCUGCu---ACGGGUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 29656 | 0.79 | 0.163554 |
Target: 5'- gAUGAGGUAGcCGuUGCCCagcAGGGCGCg -3' miRNA: 3'- gUGCUUUAUCuGCuACGGG---UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 33783 | 0.76 | 0.22811 |
Target: 5'- aGCGAGuacGGCGcgGCCUGGGGCGUu -3' miRNA: 3'- gUGCUUuauCUGCuaCGGGUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 7112 | 0.75 | 0.2973 |
Target: 5'- gCACGA--UGGACugcguGAUGCCCagcgguugcauaAGGGCGCu -3' miRNA: 3'- -GUGCUuuAUCUG-----CUACGGG------------UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 33153 | 0.75 | 0.2973 |
Target: 5'- gCGCGAAGUGGGCGAUGgUgGaguugcggaaguGGGCGCc -3' miRNA: 3'- -GUGCUUUAUCUGCUACgGgU------------CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 22750 | 0.74 | 0.329225 |
Target: 5'- aGCaGAGUGGACu-UGCCCAGGGUGa -3' miRNA: 3'- gUGcUUUAUCUGcuACGGGUCCCGCg -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 21245 | 0.71 | 0.45983 |
Target: 5'- gCACGAucaacucgGGGuCGAUGCCCAGcaugucGGCGUa -3' miRNA: 3'- -GUGCUuua-----UCU-GCUACGGGUC------CCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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