Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 5' | -53 | NC_005357.1 | + | 42247 | 0.77 | 0.221995 |
Target: 5'- aGCGu----GACGGUGCCCagcgacaccGGGGCGCa -3' miRNA: 3'- gUGCuuuauCUGCUACGGG---------UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 12114 | 0.68 | 0.635967 |
Target: 5'- aCGCGAAGUAcACGcaaagcgGCUCgcaGGGGCGCu -3' miRNA: 3'- -GUGCUUUAUcUGCua-----CGGG---UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 25130 | 0.71 | 0.470187 |
Target: 5'- -cCGGAAUGGAUGcgcGCCCGcGGCGCc -3' miRNA: 3'- guGCUUUAUCUGCua-CGGGUcCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 7999 | 0.71 | 0.45983 |
Target: 5'- cCACGgcGUcGGACG-UGCCCuuGGCGCc -3' miRNA: 3'- -GUGCuuUA-UCUGCuACGGGucCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 31967 | 0.72 | 0.429514 |
Target: 5'- gCGCGAcuuccaGGGCGAcGCCaAGGGCGCc -3' miRNA: 3'- -GUGCUuua---UCUGCUaCGGgUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 9231 | 0.72 | 0.400405 |
Target: 5'- cCGCGAuagccagcGGUGGcCG-UGCCgAGGGCGCc -3' miRNA: 3'- -GUGCU--------UUAUCuGCuACGGgUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 41119 | 0.66 | 0.78955 |
Target: 5'- gGCcuGGUGGcCGucGCCCuGGGCGCg -3' miRNA: 3'- gUGcuUUAUCuGCuaCGGGuCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 7018 | 0.66 | 0.779314 |
Target: 5'- uCGCGuGAUGGGCGuuuGUGCCgccuguugCAGcaGGCGCa -3' miRNA: 3'- -GUGCuUUAUCUGC---UACGG--------GUC--CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 22251 | 0.67 | 0.703794 |
Target: 5'- gACGAca-AGGCGAaGCCgCAaGGCGCa -3' miRNA: 3'- gUGCUuuaUCUGCUaCGG-GUcCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 26956 | 0.69 | 0.579218 |
Target: 5'- gGCGAugcaacUGGACGGcagcuucgGCCaAGGGCGCg -3' miRNA: 3'- gUGCUuu----AUCUGCUa-------CGGgUCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 36140 | 0.71 | 0.449597 |
Target: 5'- aAUGucGUGGGCGAccuguucggccUGCCCAGcGCGCa -3' miRNA: 3'- gUGCuuUAUCUGCU-----------ACGGGUCcCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 8724 | 0.76 | 0.260842 |
Target: 5'- aCACGA---AGAUG-UGCCCGgcGGGCGCg -3' miRNA: 3'- -GUGCUuuaUCUGCuACGGGU--CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 8163 | 0.66 | 0.758364 |
Target: 5'- -uCGAu---GAUGcgGCCCAGgaaGGCGCu -3' miRNA: 3'- guGCUuuauCUGCuaCGGGUC---CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 17750 | 0.74 | 0.329225 |
Target: 5'- cCugGgcGUGGACGugGCCCGcggcGGGCGCg -3' miRNA: 3'- -GugCuuUAUCUGCuaCGGGU----CCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 15001 | 0.7 | 0.512733 |
Target: 5'- uGCGGccgccgGGcGCGGUGCgCCAGGcGCGCg -3' miRNA: 3'- gUGCUuua---UC-UGCUACG-GGUCC-CGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 41732 | 0.66 | 0.779314 |
Target: 5'- gGCGGuaucuUGGGCG--GCCCGGccGGCGCc -3' miRNA: 3'- gUGCUuu---AUCUGCuaCGGGUC--CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 12392 | 0.66 | 0.78955 |
Target: 5'- uGCGAAuacGUGGuguGggGCaCCaAGGGCGCg -3' miRNA: 3'- gUGCUU---UAUCug-CuaCG-GG-UCCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 13689 | 0.73 | 0.390986 |
Target: 5'- cCGCGc--UGGACGAUGCCaa-GGCGCu -3' miRNA: 3'- -GUGCuuuAUCUGCUACGGgucCCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 18643 | 0.67 | 0.692605 |
Target: 5'- cCACGGAauccaucuucGUAGccGCGGcgcaucgGCCCGGuGGCGCc -3' miRNA: 3'- -GUGCUU----------UAUC--UGCUa------CGGGUC-CCGCG- -5' |
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26538 | 5' | -53 | NC_005357.1 | + | 37728 | 0.67 | 0.725935 |
Target: 5'- cUACGAGGgcGGCGucgGUGCCUuucucaccGGGGCGg -3' miRNA: 3'- -GUGCUUUauCUGC---UACGGG--------UCCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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