Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26538 | 5' | -53 | NC_005357.1 | + | 42247 | 0.77 | 0.221995 |
Target: 5'- aGCGu----GACGGUGCCCagcgacaccGGGGCGCa -3' miRNA: 3'- gUGCuuuauCUGCUACGGG---------UCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 41732 | 0.66 | 0.779314 |
Target: 5'- gGCGGuaucuUGGGCG--GCCCGGccGGCGCc -3' miRNA: 3'- gUGCUuu---AUCUGCuaCGGGUC--CCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 41119 | 0.66 | 0.78955 |
Target: 5'- gGCcuGGUGGcCGucGCCCuGGGCGCg -3' miRNA: 3'- gUGcuUUAUCuGCuaCGGGuCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 37728 | 0.67 | 0.725935 |
Target: 5'- cUACGAGGgcGGCGucgGUGCCUuucucaccGGGGCGg -3' miRNA: 3'- -GUGCUUUauCUGC---UACGGG--------UCCCGCg -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 36140 | 0.71 | 0.449597 |
Target: 5'- aAUGucGUGGGCGAccuguucggccUGCCCAGcGCGCa -3' miRNA: 3'- gUGCuuUAUCUGCU-----------ACGGGUCcCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 36021 | 0.66 | 0.758364 |
Target: 5'- gACGAGuucGACGAcaucaCCgAGGGCGCc -3' miRNA: 3'- gUGCUUuauCUGCUac---GGgUCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 34633 | 0.67 | 0.681354 |
Target: 5'- aGCGAGugGGAC-AUGCCCaucgccucgcAGGGCGa -3' miRNA: 3'- gUGCUUuaUCUGcUACGGG----------UCCCGCg -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 33783 | 0.76 | 0.22811 |
Target: 5'- aGCGAGuacGGCGcgGCCUGGGGCGUu -3' miRNA: 3'- gUGCUUuauCUGCuaCGGGUCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 33153 | 0.75 | 0.2973 |
Target: 5'- gCGCGAAGUGGGCGAUGgUgGaguugcggaaguGGGCGCc -3' miRNA: 3'- -GUGCUUUAUCUGCUACgGgU------------CCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 31967 | 0.72 | 0.429514 |
Target: 5'- gCGCGAcuuccaGGGCGAcGCCaAGGGCGCc -3' miRNA: 3'- -GUGCUuua---UCUGCUaCGGgUCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 29656 | 0.79 | 0.163554 |
Target: 5'- gAUGAGGUAGcCGuUGCCCagcAGGGCGCg -3' miRNA: 3'- gUGCUUUAUCuGCuACGGG---UCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 29284 | 0.67 | 0.71933 |
Target: 5'- gACGugGUAGGCGAcgaacugcuggcccuUGCCCAGcacuucaaGGCGg -3' miRNA: 3'- gUGCuuUAUCUGCU---------------ACGGGUC--------CCGCg -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 27303 | 0.66 | 0.779314 |
Target: 5'- gGCGAAGgcuucccACGAcGCCCAcaGGCGCg -3' miRNA: 3'- gUGCUUUauc----UGCUaCGGGUc-CCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 26956 | 0.69 | 0.579218 |
Target: 5'- gGCGAugcaacUGGACGGcagcuucgGCCaAGGGCGCg -3' miRNA: 3'- gUGCUuu----AUCUGCUa-------CGGgUCCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 25775 | 0.68 | 0.635967 |
Target: 5'- gGCGGcaacGAUGGccGCGAUGCgCGcGGCGCg -3' miRNA: 3'- gUGCU----UUAUC--UGCUACGgGUcCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 25130 | 0.71 | 0.470187 |
Target: 5'- -cCGGAAUGGAUGcgcGCCCGcGGCGCc -3' miRNA: 3'- guGCUUUAUCUGCua-CGGGUcCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 22750 | 0.74 | 0.329225 |
Target: 5'- aGCaGAGUGGACu-UGCCCAGGGUGa -3' miRNA: 3'- gUGcUUUAUCUGcuACGGGUCCCGCg -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 22251 | 0.67 | 0.703794 |
Target: 5'- gACGAca-AGGCGAaGCCgCAaGGCGCa -3' miRNA: 3'- gUGCUuuaUCUGCUaCGG-GUcCCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 21245 | 0.71 | 0.45983 |
Target: 5'- gCACGAucaacucgGGGuCGAUGCCCAGcaugucGGCGUa -3' miRNA: 3'- -GUGCUuua-----UCU-GCUACGGGUC------CCGCG- -5' |
|||||||
26538 | 5' | -53 | NC_005357.1 | + | 18643 | 0.67 | 0.692605 |
Target: 5'- cCACGGAauccaucuucGUAGccGCGGcgcaucgGCCCGGuGGCGCc -3' miRNA: 3'- -GUGCUU----------UAUC--UGCUa------CGGGUC-CCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home