miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 3' -59.2 NC_005357.1 + 5688 0.67 0.32274
Target:  5'- uGCUUGcCGGCCuugucCUUGGCCuuGUCggucGGCa -3'
miRNA:   3'- uCGAAC-GUCGGu----GAACCGG--CGGa---CCG- -5'
26539 3' -59.2 NC_005357.1 + 5342 0.67 0.31483
Target:  5'- cAGCaugGCAucgcGCUGCgUGGCCGCCUGcaccGCg -3'
miRNA:   3'- -UCGaa-CGU----CGGUGaACCGGCGGAC----CG- -5'
26539 3' -59.2 NC_005357.1 + 30834 0.68 0.307067
Target:  5'- uGCUgcccgGCGGCCAgccGGCgGCCcugGGCg -3'
miRNA:   3'- uCGAa----CGUCGGUgaaCCGgCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 13168 0.68 0.307067
Target:  5'- cGGCcagUGuCGGCCGCgcUGGgCGCCcuUGGCc -3'
miRNA:   3'- -UCGa--AC-GUCGGUGa-ACCgGCGG--ACCG- -5'
26539 3' -59.2 NC_005357.1 + 8633 0.68 0.307067
Target:  5'- cGC-UGCGGUgGCgaGGUCGCC-GGCc -3'
miRNA:   3'- uCGaACGUCGgUGaaCCGGCGGaCCG- -5'
26539 3' -59.2 NC_005357.1 + 25589 0.68 0.299452
Target:  5'- cGCUcgUGCAuccgaacuaugcGCCGCgugaacUGcGCCGCCUGGg -3'
miRNA:   3'- uCGA--ACGU------------CGGUGa-----AC-CGGCGGACCg -5'
26539 3' -59.2 NC_005357.1 + 11696 0.68 0.284662
Target:  5'- ---cUGCGGCgGaCUUaGCCGCUUGGCg -3'
miRNA:   3'- ucgaACGUCGgU-GAAcCGGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 26371 0.68 0.277486
Target:  5'- cGCgcgGCGGCCACgugcgcgaacUGGCCuacaaCUGGCa -3'
miRNA:   3'- uCGaa-CGUCGGUGa---------ACCGGcg---GACCG- -5'
26539 3' -59.2 NC_005357.1 + 25744 0.68 0.270455
Target:  5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3'
miRNA:   3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5'
26539 3' -59.2 NC_005357.1 + 12236 0.68 0.270455
Target:  5'- aAGCccgGCGGCUACUucaUGGCCuucaccgaCUGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGUGA---ACCGGcg------GACCG- -5'
26539 3' -59.2 NC_005357.1 + 41751 0.69 0.263569
Target:  5'- cGGCcgGC-GCCGCcguaGGCgGCCUGGUg -3'
miRNA:   3'- -UCGaaCGuCGGUGaa--CCGgCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 6771 0.69 0.250223
Target:  5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3'
miRNA:   3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 40194 0.69 0.243762
Target:  5'- ----cGCGGCCACgc-GCCGCCUGcuGCg -3'
miRNA:   3'- ucgaaCGUCGGUGaacCGGCGGAC--CG- -5'
26539 3' -59.2 NC_005357.1 + 19028 0.69 0.23744
Target:  5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3'
miRNA:   3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5'
26539 3' -59.2 NC_005357.1 + 9490 0.69 0.23744
Target:  5'- ----cGCAGCCG--UGGUCGCcCUGGCc -3'
miRNA:   3'- ucgaaCGUCGGUgaACCGGCG-GACCG- -5'
26539 3' -59.2 NC_005357.1 + 8667 0.69 0.231256
Target:  5'- cGCUgugUGCAGCgGCUgcUGcGCCGCCcaGGUg -3'
miRNA:   3'- uCGA---ACGUCGgUGA--AC-CGGCGGa-CCG- -5'
26539 3' -59.2 NC_005357.1 + 715 0.69 0.231256
Target:  5'- -uCUUGuCGGCCAC--GGCCaagucgagcGCCUGGCg -3'
miRNA:   3'- ucGAAC-GUCGGUGaaCCGG---------CGGACCG- -5'
26539 3' -59.2 NC_005357.1 + 39588 0.7 0.219295
Target:  5'- cGCUggUGCuggcGCCGCUgcgcgUGGCCGCgagcacCUGGCc -3'
miRNA:   3'- uCGA--ACGu---CGGUGA-----ACCGGCG------GACCG- -5'
26539 3' -59.2 NC_005357.1 + 13439 0.7 0.213515
Target:  5'- cGGCagGCccGCCAgCUUGGCgGCCUcgGGCg -3'
miRNA:   3'- -UCGaaCGu-CGGU-GAACCGgCGGA--CCG- -5'
26539 3' -59.2 NC_005357.1 + 464 0.7 0.202347
Target:  5'- cAGCUUGCGGgCGCUgucgcGGUCggauGCCUcGGCa -3'
miRNA:   3'- -UCGAACGUCgGUGAa----CCGG----CGGA-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.