miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26539 5' -54.5 NC_005357.1 + 19281 0.69 0.520234
Target:  5'- aUCGCCGUagaacAGCGUgGu-CGCCUGGGu- -3'
miRNA:   3'- -AGUGGCG-----UCGCAgCuuGUGGACCUuc -5'
26539 5' -54.5 NC_005357.1 + 20122 0.68 0.557374
Target:  5'- aCACCGU--CGUCGAAUgccacgccuucggggGCCUGGAAu -3'
miRNA:   3'- aGUGGCGucGCAGCUUG---------------UGGACCUUc -5'
26539 5' -54.5 NC_005357.1 + 21830 0.7 0.457304
Target:  5'- aCGCCGCcuGGCGaaGGAUACCgaGGAAGc -3'
miRNA:   3'- aGUGGCG--UCGCagCUUGUGGa-CCUUC- -5'
26539 5' -54.5 NC_005357.1 + 21989 0.66 0.698414
Target:  5'- uUCG-CGCAGCGUgCGGguuucgucgGCGCCUGGc-- -3'
miRNA:   3'- -AGUgGCGUCGCA-GCU---------UGUGGACCuuc -5'
26539 5' -54.5 NC_005357.1 + 25086 0.66 0.653729
Target:  5'- cCAgCGCAGCG-CGcccGGCGCCgUGGGAu -3'
miRNA:   3'- aGUgGCGUCGCaGC---UUGUGG-ACCUUc -5'
26539 5' -54.5 NC_005357.1 + 25630 0.66 0.66496
Target:  5'- gUCGCCaGCAGCG-CGucCACCUcGGcGAGu -3'
miRNA:   3'- -AGUGG-CGUCGCaGCuuGUGGA-CC-UUC- -5'
26539 5' -54.5 NC_005357.1 + 27402 0.67 0.642477
Target:  5'- gUCGCUcuuGUAGuCGUCGcGCGCCUGGc-- -3'
miRNA:   3'- -AGUGG---CGUC-GCAGCuUGUGGACCuuc -5'
26539 5' -54.5 NC_005357.1 + 28088 0.68 0.572895
Target:  5'- -gGCCGCGGCGUCguauuccgucgcgguGAucguggucacgcgguACGCCUGGucGg -3'
miRNA:   3'- agUGGCGUCGCAG---------------CU---------------UGUGGACCuuC- -5'
26539 5' -54.5 NC_005357.1 + 28475 0.66 0.66496
Target:  5'- gUCGCCGUAGUgGUCGAGCAuCCgcucGGc-- -3'
miRNA:   3'- -AGUGGCGUCG-CAGCUUGU-GGa---CCuuc -5'
26539 5' -54.5 NC_005357.1 + 29139 0.68 0.574008
Target:  5'- -gGCCGCAuuccucugccaucGCcUCGAACACCUGcAAGg -3'
miRNA:   3'- agUGGCGU-------------CGcAGCUUGUGGACcUUC- -5'
26539 5' -54.5 NC_005357.1 + 29962 0.66 0.66496
Target:  5'- gUCGUCGCGGCGcaCGAcgGCCUGGAu- -3'
miRNA:   3'- -AGUGGCGUCGCa-GCUugUGGACCUuc -5'
26539 5' -54.5 NC_005357.1 + 32096 0.71 0.398686
Target:  5'- aCGCCGCAGCGaCGGcuACgGCCUGGc-- -3'
miRNA:   3'- aGUGGCGUCGCaGCU--UG-UGGACCuuc -5'
26539 5' -54.5 NC_005357.1 + 32856 0.68 0.574008
Target:  5'- -gGCCGCAGacgGUCGGcgccgagauugucGCGCCcgacUGGAAGg -3'
miRNA:   3'- agUGGCGUCg--CAGCU-------------UGUGG----ACCUUC- -5'
26539 5' -54.5 NC_005357.1 + 33739 0.71 0.398686
Target:  5'- aUCugCGCGGCG-C--ACACCUGGgcGg -3'
miRNA:   3'- -AGugGCGUCGCaGcuUGUGGACCuuC- -5'
26539 5' -54.5 NC_005357.1 + 34146 0.66 0.676159
Target:  5'- cCGCgGCcuggucgauAGCGugcgucagaUCGAACACCUGGGc- -3'
miRNA:   3'- aGUGgCG---------UCGC---------AGCUUGUGGACCUuc -5'
26539 5' -54.5 NC_005357.1 + 35361 0.71 0.371237
Target:  5'- -gGCCGCGGCGUCauGAAgUACCUGGc-- -3'
miRNA:   3'- agUGGCGUCGCAG--CUU-GUGGACCuuc -5'
26539 5' -54.5 NC_005357.1 + 37203 0.66 0.675041
Target:  5'- aCACCGUGGCGUCcAACAUCcucgacgUGGGc- -3'
miRNA:   3'- aGUGGCGUCGCAGcUUGUGG-------ACCUuc -5'
26539 5' -54.5 NC_005357.1 + 38879 0.72 0.362379
Target:  5'- cCGCUGCuGCGcuauUCGGcgGCGCCUGGAAc -3'
miRNA:   3'- aGUGGCGuCGC----AGCU--UGUGGACCUUc -5'
26539 5' -54.5 NC_005357.1 + 39599 0.74 0.267761
Target:  5'- gCGCCGCuGCGcguggccgCGAGCACCUGGc-- -3'
miRNA:   3'- aGUGGCGuCGCa-------GCUUGUGGACCuuc -5'
26539 5' -54.5 NC_005357.1 + 39756 0.76 0.188864
Target:  5'- -uGCCGUGGCugaUCGAACACCUGGgcGa -3'
miRNA:   3'- agUGGCGUCGc--AGCUUGUGGACCuuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.