Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26539 | 5' | -54.5 | NC_005357.1 | + | 16437 | 0.7 | 0.471638 |
Target: 5'- aUCGCCgGCGGCGUUGAACACggcgucguagaucGGggGc -3' miRNA: 3'- -AGUGG-CGUCGCAGCUUGUGga-----------CCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 19281 | 0.69 | 0.520234 |
Target: 5'- aUCGCCGUagaacAGCGUgGu-CGCCUGGGu- -3' miRNA: 3'- -AGUGGCG-----UCGCAgCuuGUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 20122 | 0.68 | 0.557374 |
Target: 5'- aCACCGU--CGUCGAAUgccacgccuucggggGCCUGGAAu -3' miRNA: 3'- aGUGGCGucGCAGCUUG---------------UGGACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 2839 | 0.66 | 0.66496 |
Target: 5'- cCACgCGCAGCGgCGccAGCACCaGcGAGGg -3' miRNA: 3'- aGUG-GCGUCGCaGC--UUGUGGaC-CUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 37203 | 0.66 | 0.675041 |
Target: 5'- aCACCGUGGCGUCcAACAUCcucgacgUGGGc- -3' miRNA: 3'- aGUGGCGUCGCAGcUUGUGG-------ACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 9813 | 0.66 | 0.676159 |
Target: 5'- -gACCGCGGCGUCGcGGC-CCUuGAc- -3' miRNA: 3'- agUGGCGUCGCAGC-UUGuGGAcCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 34146 | 0.66 | 0.676159 |
Target: 5'- cCGCgGCcuggucgauAGCGugcgucagaUCGAACACCUGGGc- -3' miRNA: 3'- aGUGgCG---------UCGC---------AGCUUGUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 7996 | 0.66 | 0.687314 |
Target: 5'- gCACCaCGGCGUCGGACGugccCUUGGc-- -3' miRNA: 3'- aGUGGcGUCGCAGCUUGU----GGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 5390 | 0.66 | 0.687314 |
Target: 5'- gUCACUGguGCGcgccgCGAGCACCUu---- -3' miRNA: 3'- -AGUGGCguCGCa----GCUUGUGGAccuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 41289 | 0.66 | 0.687314 |
Target: 5'- cCGCCGUAGCG-CGAgcuaacgguuACACCgGGccGa -3' miRNA: 3'- aGUGGCGUCGCaGCU----------UGUGGaCCuuC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 12977 | 0.67 | 0.631215 |
Target: 5'- gUCGCCuGguGCcagGAGCACCUGGGc- -3' miRNA: 3'- -AGUGG-CguCGcagCUUGUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 40406 | 0.67 | 0.608705 |
Target: 5'- aUCGCCuGC-GCGacuucgccagCGAGCGCCUGGGc- -3' miRNA: 3'- -AGUGG-CGuCGCa---------GCUUGUGGACCUuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 7620 | 0.68 | 0.541977 |
Target: 5'- gUCG-CGCAGCGcCGGACACgUGGc-- -3' miRNA: 3'- -AGUgGCGUCGCaGCUUGUGgACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 21830 | 0.7 | 0.457304 |
Target: 5'- aCGCCGCcuGGCGaaGGAUACCgaGGAAGc -3' miRNA: 3'- aGUGGCG--UCGCagCUUGUGGa-CCUUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 32096 | 0.71 | 0.398686 |
Target: 5'- aCGCCGCAGCGaCGGcuACgGCCUGGc-- -3' miRNA: 3'- aGUGGCGUCGCaGCU--UG-UGGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 5472 | 0.71 | 0.380242 |
Target: 5'- aCGCCGCGGuCGUUGAugGUCUGGucGAGg -3' miRNA: 3'- aGUGGCGUC-GCAGCUugUGGACC--UUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 35361 | 0.71 | 0.371237 |
Target: 5'- -gGCCGCGGCGUCauGAAgUACCUGGc-- -3' miRNA: 3'- agUGGCGUCGCAG--CUU-GUGGACCuuc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 38879 | 0.72 | 0.362379 |
Target: 5'- cCGCUGCuGCGcuauUCGGcgGCGCCUGGAAc -3' miRNA: 3'- aGUGGCGuCGC----AGCU--UGUGGACCUUc -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 722 | 0.72 | 0.345106 |
Target: 5'- -gGCCaCGGCcaaGUCGAGCGCCUGGcGGa -3' miRNA: 3'- agUGGcGUCG---CAGCUUGUGGACCuUC- -5' |
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26539 | 5' | -54.5 | NC_005357.1 | + | 18902 | 0.66 | 0.698414 |
Target: 5'- -gACCGCGuGCGc----CGCCUGGAAGg -3' miRNA: 3'- agUGGCGU-CGCagcuuGUGGACCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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